ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100776115	probable prolyl 4-hydroxylase 9
mtr-u.5	11410838	probable prolyl 4-hydroxylase 9
mtr-u.5	11408557	probable prolyl 4-hydroxylase 9
ppo-u.5	7465063	probable prolyl 4-hydroxylase 9
ppo-u.5	18101136	probable prolyl 4-hydroxylase 9
ppo-u.5	7469623	probable prolyl 4-hydroxylase 9
ath-u.5	AT4G33910	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
bra-r.6	103834453	probable prolyl 4-hydroxylase 9
vvi-u.5	100266991	probable prolyl 4-hydroxylase 9
vvi-u.5	100256084	probable prolyl 4-hydroxylase 9
vvi-u.5	100244673	probable prolyl 4-hydroxylase 9
ghi-r.1	107943399	probable prolyl 4-hydroxylase 9
ghi-r.1	107928976	probable prolyl 4-hydroxylase 9
ghi-r.1	107913268	probable prolyl 4-hydroxylase 9
bna-r.1	106361086	probable prolyl 4-hydroxylase 9
bna-r.1	106361059	probable prolyl 4-hydroxylase 9
cit-r.1	102613795	probable prolyl 4-hydroxylase 9
cit-r.1	102615941	probable prolyl 4-hydroxylase 9
sly-u.5	101244153	probable prolyl 4-hydroxylase 9
sly-u.5	101254254	probable prolyl 4-hydroxylase 9
sot-r.1	102591988	probable prolyl 4-hydroxylase 9
sot-r.1	102596044	probable prolyl 4-hydroxylase 9
nta-r.1	107826193	probable prolyl 4-hydroxylase 9
nta-r.1	107797624	probable prolyl 4-hydroxylase 9
nta-r.1	107768763	putative prolyl 4-hydroxylase 9
osa-u.5	4334196	probable prolyl 4-hydroxylase 9
zma-u.5	100283657	uncharacterized LOC100283657
tae-r.2	123105116	probable prolyl 4-hydroxylase 9
tae-r.2	123113408	probable prolyl 4-hydroxylase 9
tae-r.2	123122926	probable prolyl 4-hydroxylase 9
hvu-r.1	123452359	probable prolyl 4-hydroxylase 9
sbi-r.1	8085904	probable prolyl 4-hydroxylase 9
bdi-r.1	100832694	probable prolyl 4-hydroxylase 9
cre-r.1	CHLRE_10g424900v5	uncharacterized protein
cre-r.1	CHLRE_03g179500v5	uncharacterized protein

Top 50 coexpressed genes to 100776115 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100776115 (gma-u.5 coexpression data)

CoexMap"100811904"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx00330 [list] [network] Arginine and proline metabolism (121 genes)

GO BP

GO:0018401 [list] [network] peptidyl-proline hydroxylation to 4-hydroxy-L-proline

(25 genes)

IEA

GO CC

GO:0005783 [list] [network] endoplasmic reticulum

(889 genes)

IEA

GO MF

GO:0004656 [list] [network] procollagen-proline 4-dioxygenase activity	(25 genes)	IEA
GO:0031418 [list] [network] L-ascorbic acid binding	(31 genes)	IEA
GO:0005506 [list] [network] iron ion binding	(508 genes)	IEA

Protein

XP_003517331.1 [sequence] [blastp]
XP_014631719.1 [sequence] [blastp]
XP_014631721.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 2, mito 2, golg 1, cyto_nucl 1, chlo_mito 1, mito_plas 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_003517331.1)
chlo 2, cyto 2, golg 1, cyto_nucl 1, chlo_mito 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_014631719.1)
cyto 2, mito 1, vacu 1, golg 1, cyto_nucl 1, cyto_E.R. 1, cyto_plas 1	(predict for XP_014631721.1)

Subcellular
localization
TargetP

mito 4	(predict for XP_003517331.1)
mito 4	(predict for XP_014631719.1)
mito 4	(predict for XP_014631721.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100776115	mtr-u.5 for 11410838	mtr-u.5 for 11408557	ppo-u.5 for 7465063	ppo-u.5 for 18101136	ppo-u.5 for 7469623	ath-u.5 for AT4G33910	bra-r.6 for 103834453	vvi-u.5 for 100266991	vvi-u.5 for 100256084	vvi-u.5 for 100244673	ghi-r.1 for 107943399	ghi-r.1 for 107928976	ghi-r.1 for 107913268	bna-r.1 for 106361086	bna-r.1 for 106361059	cit-r.1 for 102613795	cit-r.1 for 102615941	sly-u.5 for 101244153	sly-u.5 for 101254254	sot-r.1 for 102591988	sot-r.1 for 102596044	nta-r.1 for 107826193	nta-r.1 for 107797624	nta-r.1 for 107768763	osa-u.5 for 4334196	zma-u.5 for 100283657	tae-r.2 for 123105116	tae-r.2 for 123113408	tae-r.2 for 123122926	hvu-r.1 for 123452359	sbi-r.1 for 8085904	bdi-r.1 for 100832694	cre-r.1 for CHLRE_10g424900v5	cre-r.1 for CHLRE_03g179500v5

Ortholog

Ortholog ID: 4347

Species

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

probable prolyl 4-hydroxylase 9

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

probable prolyl 4-hydroxylase 9

putative prolyl 4-hydroxylase 9

probable prolyl 4-hydroxylase 9

uncharacterized LOC100283657

probable prolyl 4-hydroxylase 9

uncharacterized protein

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	7
ppo04626	Plant-pathogen interaction	4
ppo03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	2
ath04144	Endocytosis	2
ath04145	Phagosome	2
ath04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04130	SNARE interactions in vesicular transport	3
bra04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00943	Isoflavonoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00510	N-Glycan biosynthesis	2
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00480	Glutathione metabolism	3
ghi00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	4
bna04626	Plant-pathogen interaction	4
bna00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	4
bna04626	Plant-pathogen interaction	4
bna00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	3
sly04144	Endocytosis	2
sly04016	MAPK signaling pathway - plant	2
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03060	Protein export	2
sot00510	N-Glycan biosynthesis	2
sot00513	Various types of N-glycan biosynthesis	2
sot04141	Protein processing in endoplasmic reticulum	2
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta03250	Viral life cycle - HIV-1	2
nta03272	Virion - Hepatitis viruses	2
nta00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta00330	Arginine and proline metabolism	2
nta00460	Cyanoamino acid metabolism	2
nta00500	Starch and sucrose metabolism	2
nta00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	6
nta03272	Virion - Hepatitis viruses	3
nta03250	Viral life cycle - HIV-1	2
nta00330	Arginine and proline metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00514	Other types of O-glycan biosynthesis	3
zma04141	Protein processing in endoplasmic reticulum	3
zma00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3
tae04075	Plant hormone signal transduction	3
tae00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3
tae00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu03060	Protein export	2
hvu04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	5
sbi03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	6
bdi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00330	Arginine and proline metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00330	Arginine and proline metabolism	4

Expression

Expression pattern

Entrez Gene ID^*

11410838

11408557

7465063

18101136

7469623

829535

103834453

100266991

100256084

100244673

107928976

107913268

107894313

106361086

106361059

102613795

102615941

101244153

101254254

102591988

102596044

107826193

107797624

107781220

4334196

100283657

123105116

123113408

123122926

123452359

8085904

100832694

5728201

5728802

The preparation time of this page was 0.1 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	1	2	3	1	1	3	3	2	2	2	2	3	1	1	3	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100776115 (gma-u.5 coexpression data)

Top 50 enrichment test to 100776115 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**