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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   HAL3A   Phosphopantothenoylcysteine decarboxylase HAL3a 
 gma-u.5   100778368   phosphopantothenoylcysteine decarboxylase-like 
 ppo-u.5   7454680   probable phosphopantothenoylcysteine decarboxylase 
 ath-u.5   HAL3A   HAL3-like protein A 
 ath-u.5   ATHAL3B   Flavoprotein 
 vvi-u.5   100246682   phosphopantothenoylcysteine decarboxylase 
 sly-u.5   101260558   phosphopantothenoylcysteine decarboxylase 
 sly-u.5   101268263   probable phosphopantothenoylcysteine decarboxylase 
 osa-u.5   4340408   phosphopantothenoylcysteine decarboxylase-like 
 zma-u.5   100194295   putative phosphopantothenoylcysteine decarboxylase 
 zma-u.5   100192815   phosphopantothenoylcysteine decarboxylase 

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Top 50 coexpressed genes to HAL3A (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HAL3A (gma-u.5 coexpression data)

CoexMap"100812130"


gmaLOC100812130 | Entrez gene ID : 100812130      
Species gma ppo ath vvi sly osa zma bdi mtr bra hvu cit bna sbi ghi sot nta cre tae
Paralog 2 1 2 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00770 [list] [network] Pantothenate and CoA biosynthesis (77 genes)
gmx01240 [list] [network] Biosynthesis of cofactors (475 genes)
GO BP
GO:0015937 [list] [network] coenzyme A biosynthetic process  (25 genes)  IEA  
GO CC
GO:0071513 [list] [network] phosphopantothenoylcysteine decarboxylase complex  (9 genes)  IEA  
GO MF
GO:0004633 [list] [network] phosphopantothenoylcysteine decarboxylase activity  (9 genes)  IEA  
GO:0010181 [list] [network] FMN binding  (72 genes)  IEA  
Protein XP_003551640.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  chlo 1  (predict for XP_003551640.1)
Subcellular
localization
TargetP
other 8  (predict for XP_003551640.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
HAL3A
gma-u.5
for
100778368
ppo-u.5
for
7454680
ath-u.5
for
HAL3A
ath-u.5
for
ATHAL3B
vvi-u.5
for
100246682
sly-u.5
for
101260558
sly-u.5
for
101268263
osa-u.5
for
4340408
zma-u.5
for
100194295
zma-u.5
for
100192815


Ortholog ID: 3460
Species gma mtr ppo ath ath bra bra vvi ghi ghi bna bna cit sly sly sot nta osa zma tae hvu sbi bdi cre
Symbol HAL3A LOC11446329 LOC7454680 HAL3A ATHAL3B LOC103859738 LOC103838873 LOC100246682 LOC107940100 LOC107960419 LOC106395455 LOC106389058 LOC102616884 LOC101260558 LOC101268263 LOC102603925 LOC107762248 LOC4340408 LOC100192815 LOC123150633 LOC123407866 LOC8070737 LOC100835817 CHLRE_10g423450v5
Function* Phosphopantothenoylcysteine decarboxylase HAL3a phosphopantothenoylcysteine decarboxylase probable phosphopantothenoylcysteine decarboxylase HAL3-like protein A Flavoprotein phosphopantothenoylcysteine decarboxylase phosphopantothenoylcysteine decarboxylase phosphopantothenoylcysteine decarboxylase probable phosphopantothenoylcysteine decarboxylase phosphopantothenoylcysteine decarboxylase phosphopantothenoylcysteine decarboxylase-like phosphopantothenoylcysteine decarboxylase phosphopantothenoylcysteine decarboxylase-like phosphopantothenoylcysteine decarboxylase probable phosphopantothenoylcysteine decarboxylase phosphopantothenoylcysteine decarboxylase-like phosphopantothenoylcysteine decarboxylase HAL3 phosphopantothenoylcysteine decarboxylase-like phosphopantothenoylcysteine decarboxylase phosphopantothenoylcysteine decarboxylase phosphopantothenoylcysteine decarboxylase-like phosphopantothenoylcysteine decarboxylase phosphopantothenoylcysteine decarboxylase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03082 ATP-dependent chromatin remodeling 2
ppo03030 DNA replication 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00770 Pantothenate and CoA biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi00770 Pantothenate and CoA biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00770 Pantothenate and CoA biosynthesis 5
bna01240 Biosynthesis of cofactors 5
bna00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00770 Pantothenate and CoA biosynthesis 5
bna01240 Biosynthesis of cofactors 5
bna00230 Purine metabolism 2
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00710 Carbon fixation by Calvin cycle 3
cit01200 Carbon metabolism 3
cit00010 Glycolysis / Gluconeogenesis 2
cit01230 Biosynthesis of amino acids 2
cit00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00510 N-Glycan biosynthesis 2
sly00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 2
sly03410 Base excision repair 2
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00770 Pantothenate and CoA biosynthesis 4
nta01240 Biosynthesis of cofactors 4
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa04130 SNARE interactions in vesicular transport 2
osa04814 Motor proteins 2
osa04120 Ubiquitin mediated proteolysis 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00770 Pantothenate and CoA biosynthesis 2
zma01240 Biosynthesis of cofactors 2
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00770 Pantothenate and CoA biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae04145 Phagosome 3
tae04517 IgSF CAM signaling 3
tae04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00600 Sphingolipid metabolism 2
cre04382 Cornified envelope formation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100499989 11446329 7454680 821327 2745818 103859738 103838873 100246682 107940100 107960419 106395455 106389058 102616884 101260558 101268263 102603925 107762248 4340408 100192815 123150633 123407866 8070737 100835817 5728228
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