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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100812332   cysteine--tRNA ligase 2, cytoplasmic 
 gma-r.7   100812332   cysteine--tRNA ligase 2, cytoplasmic 
 gma-u.5   100777971   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.5   100777447   cysteine--tRNA ligase 2, cytoplasmic 
 gma-u.5   100786700   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   11432999   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   11431016   cysteine--tRNA ligase 2, cytoplasmic 
 ppo-u.5   7475579   cysteine--tRNA ligase 2, cytoplasmic 
 ppo-u.5   7458385   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 ath-u.5   SYCO ARATH   Cysteinyl-tRNA synthetase, class Ia family protein 
 ath-u.5   AT3G56300   Cysteinyl-tRNA synthetase, class Ia family protein 
 ath-u.5   AT5G38830   Cysteinyl-tRNA synthetase, class Ia family protein 
 vvi-u.5   100854736   cysteine--tRNA ligase 2, cytoplasmic 
 vvi-u.5   100251639   cysteine--tRNA ligase 2, cytoplasmic 
 vvi-u.5   100245851   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 sly-u.5   101251377   cysteine--tRNA ligase 2, cytoplasmic 
 sly-u.5   101256769   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 osa-u.5   9270000   cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 
 osa-u.5   4347821   cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like 
 zma-u.5   100280495   uncharacterized LOC100280495 
 zma-u.5   100193566   Cysteine--tRNA ligase 1 cytoplasmic 
 zma-u.5   100192902   Cysteine--tRNA ligase chloroplastic/mitochondrial 

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Top 50 coexpressed genes to 100812332 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100812332 (gma-u.5 coexpression data)

CoexMap"100812332"


gmaLOC100812332 | Entrez gene ID : 100812332      
Species gma mtr ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 5 2 2 3 3 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00970 [list] [network] Aminoacyl-tRNA biosynthesis (137 genes)
GO BP
GO:0006423 [list] [network] cysteinyl-tRNA aminoacylation  (4 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0004817 [list] [network] cysteine-tRNA ligase activity  (4 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (3753 genes)  IEA  
Protein XP_006589683.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_006589683.1)
Subcellular
localization
TargetP
other 9  (predict for XP_006589683.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100812332

.
gma-r.7
for
100812332

.
gma-u.5
for
100777971

.
gma-u.5
for
100777447

.
gma-u.5
for
100786700

.
mtr-u.5
for
11432999

.
mtr-u.5
for
11431016

.
ppo-u.5
for
7475579

.
ppo-u.5
for
7458385

.
ath-u.5
for
SYCO ARATH

.
ath-u.5
for
AT3G56300

.
ath-u.5
for
AT5G38830

.
vvi-u.5
for
100854736

.
vvi-u.5
for
100251639

.
vvi-u.5
for
100245851

.
sly-u.5
for
101251377

.
sly-u.5
for
101256769

.
osa-u.5
for
9270000

.
osa-u.5
for
4347821

.
zma-u.5
for
100280495

.
zma-u.5
for
100193566

.
zma-u.5
for
100192902

.


Ortholog ID: 1960
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol SYCO ARATH AT5G38830 LOC100786700 LOC100812332 LOC101251377 LOC101256769 LOC4347821 LOC100193566 LOC103644288 LOC103856987 LOC103850130 LOC100245851 LOC100854736 LOC7458385 LOC7475579 LOC11432999 LOC11431016 LOC123104780 LOC123113064 LOC123451939 LOC123449680 LOC107947014 LOC107947024 LOC106352661 LOC111211565 CHLRE_01g069472v5 LOC110430328 LOC8077246 LOC102604325 LOC102581041 LOC102608826 LOC102624731 LOC100834139 LOC100837019 LOC107796507 LOC107766982
Function* Cysteinyl-tRNA synthetase, class Ia family protein Cysteinyl-tRNA synthetase, class Ia family protein cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like Cysteine--tRNA ligase 1 cytoplasmic cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial-like cysteine--tRNA ligase 2, cytoplasmic-like cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial-like cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase 2, cytoplasmic-like uncharacterized protein cysteine--tRNA ligase, chloroplastic/mitochondrial-like cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase 2, cytoplasmic cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial cysteine--tRNA ligase, chloroplastic/mitochondrial cysteine--tRNA ligase, chloroplastic/mitochondrial-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 2
bra00520 Amino sugar and nucleotide sugar metabolism 2
bra01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 5
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 9
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 7
tae03040 Spliceosome 2
tae04141 Protein processing in endoplasmic reticulum 2
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu00970 Aminoacyl-tRNA biosynthesis 3
hvu00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 5
cre01240 Biosynthesis of cofactors 4
cre03060 Protein export 2
cre00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 5
sbi01200 Carbon metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot00970 Aminoacyl-tRNA biosynthesis 2
sot04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 4
bdi00970 Aminoacyl-tRNA biosynthesis 3
bdi00020 Citrate cycle (TCA cycle) 3
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
bdi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00780 Biotin metabolism 3
nta01240 Biosynthesis of cofactors 3
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817673 833874 100786700 100812332 101251377 101256769 4347821 100193566 103644288 103856987 103850130 100245851 100854736 7458385 7475579 11432999 11431016 123104780 123113064 123451939 123449680 107947014 107947024 106352661 111211565 5725796 110430328 8077246 102604325 102581041 102608826 102624731 100834139 100837019 107796507 107766982
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