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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100812849   pentatricopeptide repeat-containing protein At4g17616 
 gma-r.7   100812849   pentatricopeptide repeat-containing protein At4g17616 
 mtr-u.5   25493580   pentatricopeptide repeat-containing protein At4g17616 
 ppo-u.5   18096902   pentatricopeptide repeat-containing protein At4g17616 
 ath-u.5   AT4G17616   Pentatricopeptide repeat (PPR) superfamily protein 
 vvi-u.5   100853585   pentatricopeptide repeat-containing protein At4g17616 
 sly-u.5   101259433   pentatricopeptide repeat-containing protein At4g17616 
 osa-u.5   4343289   pentatricopeptide repeat-containing protein At4g17616 
 zma-u.5   103642138   uncharacterized LOC103642138 

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Top 50 coexpressed genes to 100812849 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100812849 (gma-u.5 coexpression data)

CoexMap"100812849"


gmaLOC100812849 | Entrez gene ID : 100812849      
Species gma mtr ppo ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_003550925.1 [sequence] [blastp]
XP_040867150.1 [sequence] [blastp]
XP_040867151.1 [sequence] [blastp]
XP_040867152.1 [sequence] [blastp]
XP_040867153.1 [sequence] [blastp]
XP_040867154.1 [sequence] [blastp]
XP_040867155.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  mito 2,  nucl 2,  cyto_mito 1,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_003550925.1)
chlo 4,  mito 2,  cyto_mito 1,  cyto 1,  nucl 1,  plas 1,  cysk 1,  cysk_nucl 1,  nucl_plas 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for XP_040867150.1)
cyto 6,  nucl 3  (predict for XP_040867151.1)
cyto 6,  nucl 3  (predict for XP_040867152.1)
chlo 4,  cyto 4,  nucl 1,  mito 1,  cysk 1,  nucl_plas 1  (predict for XP_040867153.1)
chlo 4,  cyto 4,  nucl 1,  mito 1,  cysk 1,  nucl_plas 1  (predict for XP_040867154.1)
chlo 4,  cyto 4,  nucl 1,  mito 1,  cysk 1,  nucl_plas 1  (predict for XP_040867155.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_003550925.1)
mito 7  (predict for XP_040867150.1)
other 6  (predict for XP_040867151.1)
other 6  (predict for XP_040867152.1)
other 5,  mito 3  (predict for XP_040867153.1)
other 5,  mito 3  (predict for XP_040867154.1)
other 5,  mito 3  (predict for XP_040867155.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100812849

.
gma-r.7
for
100812849

.
mtr-u.5
for
25493580

.
ppo-u.5
for
18096902

.
ath-u.5
for
AT4G17616

.
vvi-u.5
for
100853585

.
sly-u.5
for
101259433

.
osa-u.5
for
4343289

.
zma-u.5
for
103642138

.


Ortholog ID: 11156
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT4G17616 LOC100812849 LOC101259433 LOC4343289 LOC103642138 LOC103860924 LOC100853585 LOC18096902 LOC25493580 LOC123045909 LOC123189660 LOC123411833 LOC107926596 LOC107953537 LOC106440229 LOC111197910 LOC8068506 LOC102602769 LOC102630251 LOC100822802 LOC107821637 LOC107793602
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 uncharacterized LOC103642138 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616 pentatricopeptide repeat-containing protein At4g17616
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00010 Glycolysis / Gluconeogenesis 3
ppo01200 Carbon metabolism 3
ppo01230 Biosynthesis of amino acids 2
ppo00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
ppo00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 6240541 100812849 101259433 4343289 103642138 103860924 100853585 18096902 25493580 123045909 123189660 123411833 107926596 107953537 106440229 111197910 8068506 102602769 102630251 100822802 107821637 107793602
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