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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100813222   ubiquitin carboxyl-terminal hydrolase MINDY-3 
 gma-r.7   100813222   ubiquitin carboxyl-terminal hydrolase MINDY-3 
 gma-m.5   100813222   ubiquitin carboxyl-terminal hydrolase MINDY-3 
 gma-u.5   100815405   ubiquitin carboxyl-terminal hydrolase MINDY-3 
 mtr-u.5   11417848   ubiquitin carboxyl-terminal hydrolase MINDY-3 
 ppo-u.5   18096176   uncharacterized LOC18096176 
 ppo-u.5   7469216   uncharacterized LOC7469216 
 ath-u.5   AT1G43690   ubiquitin interaction motif-containing protein 
 vvi-u.5   100258904   uncharacterized LOC100258904 
 sly-u.5   101265818   uncharacterized LOC101265818 
 osa-u.5   4335833   uncharacterized LOC4335833 
 zma-u.5   103641635   ubiquitin carboxyl-terminal hydrolase MINDY-3 
 zma-u.5   100279307   uncharacterized LOC100279307 

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Top 50 coexpressed genes to 100813222 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100813222 (gma-u.5 coexpression data)

CoexMap"100813222"


gmaLOC100813222 | Entrez gene ID : 100813222      
Species gma mtr ppo ath vvi sly osa zma sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 4 1 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0071108 [list] [network] protein K48-linked deubiquitination  (12 genes)  IEA  
GO CC
GO MF
GO:1990380 [list] [network] K48-linked deubiquitinase activity  (5 genes)  IEA  
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (98 genes)  IEA  
Protein XP_003536430.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  plas 1,  E.R. 1,  E.R._plas 1  (predict for XP_003536430.1)
Subcellular
localization
TargetP
other 9  (predict for XP_003536430.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100813222

.
gma-r.7
for
100813222

.
gma-m.5
for
100813222

.
gma-u.5
for
100815405

.
mtr-u.5
for
11417848

.
ppo-u.5
for
18096176

.
ppo-u.5
for
7469216

.
ath-u.5
for
AT1G43690

.
vvi-u.5
for
100258904

.
sly-u.5
for
101265818

.
osa-u.5
for
4335833

.
zma-u.5
for
103641635

.
zma-u.5
for
100279307

.


Ortholog ID: 7832
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G43690 LOC100815405 LOC100813222 LOC101265818 LOC4335833 LOC100279307 LOC103641635 LOC103847704 LOC100258904 LOC18096176 LOC7469216 LOC11417848 LOC123045455 LOC123189196 LOC123426705 LOC107957525 LOC107914112 LOC106424785 LOC106410722 CHLRE_06g286600v5 LOC8073022 LOC102589602 LOC102611276 LOC100821161 LOC107807365 LOC107817612
Function* ubiquitin interaction motif-containing protein ubiquitin carboxyl-terminal hydrolase MINDY-3 ubiquitin carboxyl-terminal hydrolase MINDY-3 uncharacterized LOC101265818 uncharacterized LOC4335833 uncharacterized LOC100279307 ubiquitin carboxyl-terminal hydrolase MINDY-3 ubiquitin carboxyl-terminal hydrolase MINDY-3 uncharacterized LOC100258904 uncharacterized LOC18096176 uncharacterized LOC7469216 ubiquitin carboxyl-terminal hydrolase MINDY-3 ubiquitin carboxyl-terminal hydrolase MINDY-3 ubiquitin carboxyl-terminal hydrolase MINDY-3 ubiquitin carboxyl-terminal hydrolase MINDY-3 ubiquitin carboxyl-terminal hydrolase MINDY-3 ubiquitin carboxyl-terminal hydrolase MINDY-3 ubiquitin carboxyl-terminal hydrolase MINDY-3 ubiquitin carboxyl-terminal hydrolase MINDY-3 uncharacterized protein ubiquitin carboxyl-terminal hydrolase MINDY-3 protein FAM188A uncharacterized LOC102611276 ubiquitin carboxyl-terminal hydrolase MINDY-3 uncharacterized LOC107807365 uncharacterized LOC107817612
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath03015 mRNA surveillance pathway 2
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03250 Viral life cycle - HIV-1 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 3
zma04136 Autophagy - other 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo04144 Endocytosis 2
ppo05100 Bacterial invasion of epithelial cells 2
ppo03015 mRNA surveillance pathway 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo04144 Endocytosis 2
ppo05100 Bacterial invasion of epithelial cells 2
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 4
tae03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 4
tae03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00590 Arachidonic acid metabolism 2
ghi00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00650 Butanoate metabolism 2
ghi00590 Arachidonic acid metabolism 2
ghi00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 6
bna04141 Protein processing in endoplasmic reticulum 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 6
bna04144 Endocytosis 3
bna03015 mRNA surveillance pathway 2
bna04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta04070 Phosphatidylinositol signaling system 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840956 100815405 100813222 101265818 4335833 100279307 103641635 103847704 100258904 18096176 7469216 11417848 123045455 123189196 123426705 107957525 107914112 106424785 106410722 5721018 8073022 102589602 102611276 100821161 107807365 107817612
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