ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100814354	uncharacterized LOC100814354
gma-r.7	100814354	uncharacterized LOC100814354
gma-m.5	100814354	uncharacterized LOC100814354
gma-u.5	GBP	GAGA-binding protein
gma-u.5	100783209	protein BASIC PENTACYSTEINE2
mtr-u.5	120575876	protein BASIC PENTACYSTEINE1
mtr-u.5	120577634	protein BASIC PENTACYSTEINE2
ppo-u.5	18105584	protein BASIC PENTACYSTEINE2
ppo-u.5	7459089	protein BASIC PENTACYSTEINE2
ppo-u.5	7471447	protein BASIC PENTACYSTEINE2
ath-u.5	BPC1	basic pentacysteine1
ath-u.5	BPC2	basic pentacysteine 2
bra-r.6	103842953	protein BASIC PENTACYSTEINE2
bra-r.6	103872265	protein BASIC PENTACYSTEINE2
bra-r.6	103836058	protein BASIC PENTACYSTEINE2
vvi-u.5	BBR/BPC2	protein BASIC PENTACYSTEINE1-like
vvi-u.5	100233138	GAGA-binding transcriptional activator BBR/BPC1-like
ghi-r.1	121228305	protein BASIC PENTACYSTEINE1
ghi-r.1	107934525	protein BASIC PENTACYSTEINE2
ghi-r.1	107922313	protein BASIC PENTACYSTEINE2
bna-r.1	106346606	protein BASIC PENTACYSTEINE2
bna-r.1	106411648	protein BASIC PENTACYSTEINE2-like
bna-r.1	106382321	protein BASIC PENTACYSTEINE2
cit-r.1	102616365	protein BASIC PENTACYSTEINE2-like
sly-u.5	BBR/BPC1	GAGA-binding transcriptional activator
sly-u.5	BBR/BPC5	GAGA-binding transcriptional activator
sot-r.1	102593241	protein BASIC PENTACYSTEINE2-like
sot-r.1	BBR/BPC1	protein BASIC PENTACYSTEINE2-like
nta-r.1	107792698	protein BASIC PENTACYSTEINE2-like
nta-r.1	107800183	protein BASIC PENTACYSTEINE2-like
nta-r.1	107808957	protein BASIC PENTACYSTEINE2-like
osa-u.5	4347983	barley B recombinant-like protein A
osa-u.5	4347984	barley B recombinant-like protein C
osa-u.5	9268674	barley B recombinant-like protein A
zma-u.5	100191172	uncharacterized LOC100191172
zma-u.5	100285904	uncharacterized LOC100285904
zma-u.5	100283491	uncharacterized LOC100283491
tae-r.2	123092837	protein Barley B recombinant
tae-r.2	123085222	protein Barley B recombinant
tae-r.2	123098124	protein Barley B recombinant
hvu-r.1	123449207	protein Barley B recombinant
sbi-r.1	8057324	protein Barley B recombinant
sbi-r.1	8057326	protein Barley B recombinant
sbi-r.1	8076161	protein Barley B recombinant
bdi-r.1	100846523	barley B recombinant-like protein A
bdi-r.1	100846221	barley B recombinant-like protein A

Top 50 coexpressed genes to 100814354 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100814354 (gma-u.5 coexpression data)

CoexMap"100814354"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0009723 [list] [network] response to ethylene

(145 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0043565 [list] [network] sequence-specific DNA binding	(1503 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(2313 genes)	IEA

Protein

NP_001239724.1 [sequence] [blastp]
XP_006579455.1 [sequence] [blastp]
XP_006579456.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 1, plas 1, extr 1, cysk 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1	(predict for NP_001239724.1)
nucl 6, cyto 1, plas 1, extr 1, cysk 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1	(predict for XP_006579455.1)
nucl 6, cyto 1, plas 1, extr 1, cysk 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1	(predict for XP_006579456.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001239724.1)
other 9	(predict for XP_006579455.1)
other 9	(predict for XP_006579456.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100814354	gma-r.7 for 100814354	gma-m.5 for 100814354	gma-u.5 for GBP	gma-u.5 for 100783209	mtr-u.5 for 120575876	mtr-u.5 for 120577634	ppo-u.5 for 18105584	ppo-u.5 for 7459089	ppo-u.5 for 7471447	ath-u.5 for BPC1	ath-u.5 for BPC2	bra-r.6 for 103842953	bra-r.6 for 103872265	bra-r.6 for 103836058	vvi-u.5 for BBR/BPC2	vvi-u.5 for 100233138	ghi-r.1 for 121228305	ghi-r.1 for 107934525	ghi-r.1 for 107922313	bna-r.1 for 106346606	bna-r.1 for 106411648	bna-r.1 for 106382321	cit-r.1 for 102616365	sly-u.5 for BBR/BPC1	sly-u.5 for BBR/BPC5	sot-r.1 for 102593241	sot-r.1 for BBR/BPC1	nta-r.1 for 107792698	nta-r.1 for 107800183	nta-r.1 for 107808957	osa-u.5 for 4347983	osa-u.5 for 4347984	osa-u.5 for 9268674	zma-u.5 for 100191172	zma-u.5 for 100285904	zma-u.5 for 100283491	tae-r.2 for 123092837	tae-r.2 for 123085222	tae-r.2 for 123098124	hvu-r.1 for 123449207	sbi-r.1 for 8057324	sbi-r.1 for 8057326	sbi-r.1 for 8076161	bdi-r.1 for 100846523	bdi-r.1 for 100846221

Ortholog

Ortholog ID: 2254

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

GBP

BPC1

BPC2

Function^*

uncharacterized LOC100814354

GAGA-binding protein

protein BASIC PENTACYSTEINE2

protein BASIC PENTACYSTEINE1

protein BASIC PENTACYSTEINE2

basic pentacysteine1

basic pentacysteine 2

protein BASIC PENTACYSTEINE2

protein BASIC PENTACYSTEINE1-like

GAGA-binding transcriptional activator BBR/BPC1-like

protein BASIC PENTACYSTEINE1

protein BASIC PENTACYSTEINE2

protein BASIC PENTACYSTEINE2-like

GAGA-binding transcriptional activator

protein BASIC PENTACYSTEINE2-like

barley B recombinant-like protein A

barley B recombinant-like protein C

barley B recombinant-like protein A

uncharacterized LOC100191172

uncharacterized LOC100285904

uncharacterized LOC100283491

protein Barley B recombinant

barley B recombinant-like protein A

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	2
gma04120	Ubiquitin mediated proteolysis	2
gma04141	Protein processing in endoplasmic reticulum	2
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	6
mtr04120	Ubiquitin mediated proteolysis	2
mtr03082	ATP-dependent chromatin remodeling	2
mtr03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04626	Plant-pathogen interaction	3
ppo04144	Endocytosis	3
ppo04016	MAPK signaling pathway - plant	2
ppo04070	Phosphatidylinositol signaling system	2
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3
ppo03013	Nucleocytoplasmic transport	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	4
vvi04141	Protein processing in endoplasmic reticulum	3
vvi03013	Nucleocytoplasmic transport	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04016	MAPK signaling pathway - plant	3
cit04075	Plant hormone signal transduction	3
cit03040	Spliceosome	2
cit03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly04136	Autophagy - other	2
sly04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	4
sot04136	Autophagy - other	4
sot04382	Cornified envelope formation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	7
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	5
nta03013	Nucleocytoplasmic transport	3
nta03015	mRNA surveillance pathway	3
nta00730	Thiamine metabolism	2
nta00740	Riboflavin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	4
osa04145	Phagosome	3
osa04517	IgSF CAM signaling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00770	Pantothenate and CoA biosynthesis	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae00310	Lysine degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae00310	Lysine degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	6
tae00053	Ascorbate and aldarate metabolism	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01240	Biosynthesis of cofactors	3
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04517	IgSF CAM signaling	2
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

100814354

606296

100783209

120575876

120577634

7459089

7471447

7485186

814724

838031

103842953

103872265

103836058

100255909

100233138

121228305

107934525

107909954

106431061

106434643

102616365

101055562

101055564

102593241

102595573

107792698

107800183

107817801

4347983

4347984

9268674

100191172

100285904

100283491

123092837

123085222

123098124

123449207

8057324

8057326

8076161

100846523

100846221

The preparation time of this page was 0.2 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	2	3	2	3	2	3	3	1	2	2	3	3	3	3	1	3	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100814354 (gma-u.5 coexpression data)

Top 50 enrichment test to 100814354 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**