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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100814603   geranylgeranyl diphosphate reductase, chloroplastic 
 gma-r.7   100814603   geranylgeranyl diphosphate reductase, chloroplastic 
 gma-u.5   100779933   geranylgeranyl diphosphate reductase, chloroplastic 
 gma-u.5   100787525   geranylgeranyl diphosphate reductase, chloroplastic 
 mtr-u.5   11429848   geranylgeranyl diphosphate reductase, chloroplastic 
 mtr-u.5   120580108   geranylgeranyl diphosphate reductase, chloroplastic 
 ppo-u.5   7484745   geranylgeranyl diphosphate reductase, chloroplastic 
 ppo-u.5   18098056   geranylgeranyl diphosphate reductase, chloroplastic 
 ath-u.5   AT1G74470   Pyridine nucleotide-disulfide oxidoreductase family protein 
 bra-r.6   103852907   geranylgeranyl diphosphate reductase, chloroplastic 
 bra-r.6   103831923   geranylgeranyl diphosphate reductase, chloroplastic 
 vvi-u.5   100253115   geranylgeranyl diphosphate reductase, chloroplastic 
 vvi-u.5   100243277   geranylgeranyl diphosphate reductase, chloroplastic 
 ghi-r.1   107949818   geranylgeranyl diphosphate reductase, chloroplastic 
 ghi-r.1   107897682   geranylgeranyl diphosphate reductase, chloroplastic 
 ghi-r.1   107891506   geranylgeranyl diphosphate reductase, chloroplastic 
 bna-r.1   106430268   geranylgeranyl diphosphate reductase, chloroplastic 
 bna-r.1   106381375   geranylgeranyl diphosphate reductase, chloroplastic 
 bna-r.1   106405742   geranylgeranyl diphosphate reductase, chloroplastic-like 
 cit-r.1   102628832   geranylgeranyl diphosphate reductase, chloroplastic 
 cit-r.1   102606922   geranylgeranyl diphosphate reductase, chloroplastic-like 
 sly-u.5   101266160   geranylgeranyl diphosphate reductase, chloroplastic-like 
 sly-u.5   101262299   geranylgeranyl diphosphate reductase, chloroplastic 
 sot-r.1   102598599   geranylgeranyl diphosphate reductase, chloroplastic 
 sot-r.1   102599900   geranylgeranyl diphosphate reductase, chloroplastic-like 
 nta-r.1   107830453   geranylgeranyl diphosphate reductase, chloroplastic-like 
 nta-r.1   107803012   geranylgeranyl diphosphate reductase, chloroplastic-like 
 nta-r.1   107783257   geranylgeranyl diphosphate reductase, chloroplastic 
 osa-u.5   4326207   uncharacterized LOC4326207 
 osa-u.5   4330711   geranylgeranyl diphosphate reductase, chloroplastic-like 
 zma-u.5   100283007   geranylgeranyl hydrogenase1 
 zma-u.5   103649981   geranylgeranyl diphosphate reductase, chloroplastic-like 
 tae-r.2   123078110   geranylgeranyl diphosphate reductase, chloroplastic 
 tae-r.2   123061037   geranylgeranyl diphosphate reductase, chloroplastic 
 tae-r.2   123128382   geranylgeranyl diphosphate reductase, chloroplastic 
 hvu-r.1   123401542   geranylgeranyl diphosphate reductase, chloroplastic 
 hvu-r.1   123443461   geranylgeranyl diphosphate reductase, chloroplastic-like 
 sbi-r.1   8075711   geranylgeranyl diphosphate reductase, chloroplastic 
 sbi-r.1   8085832   geranylgeranyl diphosphate reductase, chloroplastic 
 bdi-r.1   100836154   geranylgeranyl diphosphate reductase, chloroplastic 
 bdi-r.1   100821798   geranylgeranyl diphosphate reductase 
 cre-r.1   CHLRE_01g050950v5   uncharacterized protein 

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Top 50 coexpressed genes to 100814603 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100814603 (gma-u.5 coexpression data)

CoexMap"100814603"


gmaLOC100814603 | Entrez gene ID : 100814603      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 1 2 2 3 3 2 2 2 3 2 2 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00860 [list] [network] Porphyrin metabolism (98 genes)
gmx00900 [list] [network] Terpenoid backbone biosynthesis (91 genes)
GO BP
GO:0015995 [list] [network] chlorophyll biosynthetic process  (25 genes)  IEA  
GO:0015979 [list] [network] photosynthesis  (162 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (205 genes)  IEA  
GO MF
GO:0045550 [list] [network] geranylgeranyl reductase activity  (3 genes)  IEA  
GO:0016628 [list] [network] oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor  (59 genes)  IEA  
GO:0071949 [list] [network] FAD binding  (123 genes)  IEA  
Protein XP_003549679.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1  (predict for XP_003549679.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_003549679.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100814603
gma-r.7
for
100814603
gma-u.5
for
100779933
gma-u.5
for
100787525
mtr-u.5
for
11429848
mtr-u.5
for
120580108
ppo-u.5
for
7484745
ppo-u.5
for
18098056
ath-u.5
for
AT1G74470
bra-r.6
for
103852907
bra-r.6
for
103831923
vvi-u.5
for
100253115
vvi-u.5
for
100243277
ghi-r.1
for
107949818
ghi-r.1
for
107897682
ghi-r.1
for
107891506
bna-r.1
for
106430268
bna-r.1
for
106381375
bna-r.1
for
106405742
cit-r.1
for
102628832
cit-r.1
for
102606922
sly-u.5
for
101266160
sly-u.5
for
101262299
sot-r.1
for
102598599
sot-r.1
for
102599900
nta-r.1
for
107830453
nta-r.1
for
107803012
nta-r.1
for
107783257
osa-u.5
for
4326207
osa-u.5
for
4330711
zma-u.5
for
100283007
zma-u.5
for
103649981
tae-r.2
for
123078110
tae-r.2
for
123061037
tae-r.2
for
123128382
hvu-r.1
for
123401542
hvu-r.1
for
123443461
sbi-r.1
for
8075711
sbi-r.1
for
8085832
bdi-r.1
for
100836154
bdi-r.1
for
100821798
cre-r.1
for
CHLRE_01g050950v5


Ortholog ID: 3753
Species gma gma gma mtr mtr ppo ppo ath bra bra vvi vvi ghi ghi ghi bna bna bna cit cit sly sly sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC100814603 LOC100779933 LOC100787525 LOC11429848 LOC120580108 LOC7484745 LOC18098056 AT1G74470 LOC103852907 LOC103831923 LOC100253115 LOC100243277 LOC107897682 LOC107891506 LOC107890070 LOC106430268 LOC106381375 LOC106405742 LOC102628832 LOC102606922 LOC101266160 LOC101262299 LOC102598599 LOC102599900 LOC107803012 LOC107783257 LOC107769989 LOC4326207 LOC4330711 LOC100283007 LOC103649981 LOC123061037 LOC123128382 LOC780623 LOC123401542 LOC123443461 LOC8075711 LOC8085832 LOC100836154 LOC100821798 CHLRE_01g050950v5
Function* geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic Pyridine nucleotide-disulfide oxidoreductase family protein geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic-like geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic-like geranylgeranyl diphosphate reductase, chloroplastic-like geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic-like geranylgeranyl diphosphate reductase, chloroplastic-like geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic-like uncharacterized LOC4326207 geranylgeranyl diphosphate reductase, chloroplastic-like geranylgeranyl hydrogenase1 geranylgeranyl diphosphate reductase, chloroplastic-like geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic-like geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase, chloroplastic geranylgeranyl diphosphate reductase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 9
gma00900 Terpenoid backbone biosynthesis 3
gma00195 Photosynthesis 3
gma00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 10
gma00900 Terpenoid backbone biosynthesis 4
gma00195 Photosynthesis 3
gma00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 7
ppo00196 Photosynthesis - antenna proteins 6
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 6
ath00196 Photosynthesis - antenna proteins 4
ath00195 Photosynthesis 3
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 4
bra00860 Porphyrin metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 5
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra00196 Photosynthesis - antenna proteins 2
bra00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 6
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 4
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 4
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 4
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 10
cit00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00670 One carbon pool by folate 4
sly01230 Biosynthesis of amino acids 4
sly01240 Biosynthesis of cofactors 3
sly00270 Cysteine and methionine metabolism 3
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00860 Porphyrin metabolism 8
sly00196 Photosynthesis - antenna proteins 3
sly00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 7
sot00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 6
nta03010 Ribosome 6
nta00860 Porphyrin metabolism 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 8
nta00900 Terpenoid backbone biosynthesis 4
nta00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 6
nta03010 Ribosome 6
nta00860 Porphyrin metabolism 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 4
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 6
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae00900 Terpenoid backbone biosynthesis 3
tae02010 ABC transporters 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 12
tae00196 Photosynthesis - antenna proteins 6
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 9
tae00196 Photosynthesis - antenna proteins 8
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 5
hvu00195 Photosynthesis 3
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 12
sbi00195 Photosynthesis 4
sbi00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 5
bdi00195 Photosynthesis 4
bdi00196 Photosynthesis - antenna proteins 3
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 3
bdi04120 Ubiquitin mediated proteolysis 3
bdi04141 Protein processing in endoplasmic reticulum 3
bdi00100 Steroid biosynthesis 3
bdi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 13
cre01240 Biosynthesis of cofactors 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100814603 100779933 100787525 11429848 120580108 7484745 18098056 843788 103852907 103831923 100253115 100243277 107897682 107891506 107890070 106430268 106381375 106405742 102628832 102606922 101266160 101262299 102598599 102599900 107803012 107783257 107769989 4326207 4330711 100283007 103649981 123061037 123128382 780623 123401542 123443461 8075711 8085832 100836154 100821798 5715748
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