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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100816596   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 gma-r.7   100816596   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 gma-u.5   100795966   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 mtr-u.5   11429745   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 ppo-u.5   7480043   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 ppo-u.5   7464675   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 ath-u.5   CSP41A   chloroplast stem-loop binding protein of 41 kDa 
 vvi-u.5   100266662   uncharacterized LOC100266662 
 sly-u.5   544217   mRNA binding protein precursor 
 osa-u.5   4342714   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 
 zma-u.5   103632122   chloroplast stem-loop binding protein of 41 kDa a, chloroplastic 

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Top 50 coexpressed genes to 100816596 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100816596 (gma-u.5 coexpression data)

CoexMap"100816596"


gmaLOC100816596 | Entrez gene ID : 100816596      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0033499 [list] [network] galactose catabolic process via UDP-galactose, Leloir pathway  (28 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (1702 genes)  IEA  
GO MF
GO:0003978 [list] [network] UDP-glucose 4-epimerase activity  (17 genes)  IEA  
Protein XP_003536518.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 2  (predict for XP_003536518.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_003536518.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100816596

.
gma-r.7
for
100816596

.
gma-u.5
for
100795966

.
mtr-u.5
for
11429745

.
ppo-u.5
for
7480043

.
ppo-u.5
for
7464675

.
ath-u.5
for
CSP41A

.
vvi-u.5
for
100266662

.
sly-u.5
for
544217

.
osa-u.5
for
4342714

.
zma-u.5
for
103632122

.


Ortholog ID: 9553
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol CSP41A LOC100795966 LOC100816596 LOC544217 LOC4342714 LOC103632122 LOC103862714 LOC100266662 LOC7464675 LOC7480043 LOC11429745 LOC123135495 LOC123131677 LOC123401890 LOC107914655 LOC107951862 LOC106369308 LOC106396732 CHLRE_10g440050v5 LOC8078434 LOC102586495 LOC102615327 LOC100829026 LOC107804230 LOC107779757
Function* chloroplast stem-loop binding protein of 41 kDa chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic mRNA binding protein precursor chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic uncharacterized LOC100266662 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic uncharacterized protein chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 8
ath00630 Glyoxylate and dicarboxylate metabolism 5
ath00710 Carbon fixation by Calvin cycle 4
ath00910 Nitrogen metabolism 2
ath00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 4
gma00010 Glycolysis / Gluconeogenesis 3
gma00710 Carbon fixation by Calvin cycle 3
gma01230 Biosynthesis of amino acids 3
gma00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00260 Glycine, serine and threonine metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma00670 One carbon pool by folate 2
gma00785 Lipoic acid metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 11
sly00710 Carbon fixation by Calvin cycle 10
sly00030 Pentose phosphate pathway 5
sly01230 Biosynthesis of amino acids 4
sly00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 3
zma00710 Carbon fixation by Calvin cycle 2
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 5
bra01200 Carbon metabolism 5
bra00010 Glycolysis / Gluconeogenesis 4
bra01230 Biosynthesis of amino acids 3
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 6
vvi01200 Carbon metabolism 3
vvi00190 Oxidative phosphorylation 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo01200 Carbon metabolism 7
ppo00710 Carbon fixation by Calvin cycle 4
ppo00010 Glycolysis / Gluconeogenesis 3
ppo00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 5
mtr00710 Carbon fixation by Calvin cycle 4
mtr00195 Photosynthesis 3
mtr00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 9
hvu00710 Carbon fixation by Calvin cycle 6
hvu00195 Photosynthesis 5
hvu00630 Glyoxylate and dicarboxylate metabolism 5
hvu00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00630 Glyoxylate and dicarboxylate metabolism 11
bna00710 Carbon fixation by Calvin cycle 11
bna01200 Carbon metabolism 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00630 Glyoxylate and dicarboxylate metabolism 11
bna00710 Carbon fixation by Calvin cycle 11
bna01200 Carbon metabolism 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 8
cre00710 Carbon fixation by Calvin cycle 7
cre00030 Pentose phosphate pathway 3
cre01230 Biosynthesis of amino acids 3
cre00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 5
sot00630 Glyoxylate and dicarboxylate metabolism 4
sot00710 Carbon fixation by Calvin cycle 3
sot01230 Biosynthesis of amino acids 2
sot00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 4
cit00195 Photosynthesis 3
cit00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 7
bdi00710 Carbon fixation by Calvin cycle 6
bdi00195 Photosynthesis 4
bdi00630 Glyoxylate and dicarboxylate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta00195 Photosynthesis 4
nta00190 Oxidative phosphorylation 2
nta00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825489 100795966 100816596 544217 4342714 103632122 103862714 100266662 7464675 7480043 11429745 123135495 123131677 123401890 107914655 107951862 106369308 106396732 5715997 8078434 102586495 102615327 100829026 107804230 107779757
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