ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	AP1A	agamous-like MADS-box protein AGL8 homolog
gma-r.7	AP1A	agamous-like MADS-box protein AGL8 homolog
gma-m.5	AP1A	agamous-like MADS-box protein AGL8 homolog
gma-u.5	100805348	truncated transcription factor CAULIFLOWER A
gma-u.5	AP1	MADS-box transcription factor
gma-u.5	FULC	MADS-box protein FULc
mtr-u.5	25488419	truncated transcription factor CAULIFLOWER A
ppo-u.5	7468138	truncated transcription factor CAULIFLOWER A
ath-u.5	AP1	K-box region and MADS-box transcription factor family protein
ath-u.5	AGL8	AGAMOUS-like 8
bra-r.6	103860551	agamous-like MADS-box protein AGL8 homolog
vvi-u.5	VFUL-L	FUL-like protein
vvi-u.5	100257072	truncated transcription factor CAULIFLOWER A
vvi-u.5	AP1	apetala1
ghi-r.1	107893801	truncated transcription factor CAULIFLOWER A-like
ghi-r.1	107949769	truncated transcription factor CAULIFLOWER A
cit-r.1	102615519	truncated transcription factor CAULIFLOWER A
cit-r.1	102612359	truncated transcription factor CAULIFLOWER A
cit-r.1	AP1	APETALA1
sly-u.5	FUL2	transcription factor FRUITFULL
sot-r.1	FUL1	Agamous-like MADS-box protein AGL8 homolog
sot-r.1	FUL2	agamous-like MADS-box protein AGL8 homolog
nta-r.1	107815093	agamous-like MADS-box protein AGL8 homolog
osa-u.5	4334140	MADS-box transcription factor 14-like
osa-u.5	4342214	MADS-box transcription factor 15-like
zma-u.5	542041	m4 protein
zma-u.5	542257	zea apetala homolog 1
zma-u.5	541765	MADS3
tae-r.2	123052951	MADS-box transcription factor 15
tae-r.2	543351	mads11 protein
tae-r.2	780641	MADS-box transcription factor 15
hvu-r.1	123452274	MADS-box transcription factor 14-like
sbi-r.1	8085925	MADS-box transcription factor 14
sbi-r.1	8054531	MADS-box transcription factor 15
bdi-r.1	100842079	MADS-box transcription factor 14-like
bdi-r.1	100845222	MADS-box transcription factor 15-like

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(294 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(449 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(557 genes)	IEA
GO:0046983 [list] [network] protein dimerization activity	(899 genes)	IEA

Protein

NP_001242674.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for NP_001242674.2)

Subcellular
localization
TargetP

mito 6, other 5

(predict for NP_001242674.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for AP1A	gma-r.7 for AP1A	gma-m.5 for AP1A	gma-u.5 for 100805348	gma-u.5 for AP1	gma-u.5 for FULC	mtr-u.5 for 25488419	ppo-u.5 for 7468138	ath-u.5 for AP1	ath-u.5 for AGL8	bra-r.6 for 103860551	vvi-u.5 for VFUL-L	vvi-u.5 for 100257072	vvi-u.5 for AP1	ghi-r.1 for 107893801	ghi-r.1 for 107949769	cit-r.1 for 102615519	cit-r.1 for 102612359	cit-r.1 for AP1	sly-u.5 for FUL2	sot-r.1 for FUL1	sot-r.1 for FUL2	nta-r.1 for 107815093	osa-u.5 for 4334140	osa-u.5 for 4342214	zma-u.5 for 542041	zma-u.5 for 542257	zma-u.5 for 541765	tae-r.2 for 123052951	tae-r.2 for 543351	tae-r.2 for 780641	hvu-r.1 for 123452274	sbi-r.1 for 8085925	sbi-r.1 for 8054531	bdi-r.1 for 100842079	bdi-r.1 for 100845222

Ortholog

Ortholog ID: 1094

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

AP1

AGL8

VFUL-L

AP1

AP1

FUL2

FUL1

FUL2

FUL1

Function^*

truncated transcription factor CAULIFLOWER A

K-box region and MADS-box transcription factor family protein

AGAMOUS-like 8

agamous-like MADS-box protein AGL8 homolog

FUL-like protein

truncated transcription factor CAULIFLOWER A

apetala1

truncated transcription factor CAULIFLOWER A-like

floral homeotic protein APETALA 1

agamous-like MADS-box protein AGL8 homolog

truncated transcription factor CAULIFLOWER A

APETALA1

transcription factor FRUITFULL

agamous-like MADS-box protein AGL8 homolog

Agamous-like MADS-box protein AGL8 homolog

agamous-like MADS-box protein AGL8 homolog

MADS-box transcription factor 14-like

MADS-box transcription factor 15-like

zea apetala homolog 1

MADS3

m15 protein

mads11 protein

MADS-box transcription factor 15

MADS-box transcription factor 14

MADS-box transcription factor 14-like

MADS-box transcription factor 14

MADS-box transcription factor 15

MADS-box transcription factor 14-like

MADS-box transcription factor 15-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00540	Lipopolysaccharide biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00260	Glycine, serine and threonine metabolism	2
sot00350	Tyrosine metabolism	2
sot00360	Phenylalanine metabolism	2
sot00410	beta-Alanine metabolism	2
sot00950	Isoquinoline alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04712	Circadian rhythm - plant	2

Expression

Expression pattern

Entrez Gene ID^*

100784742

25488419

7468138

7484716

843244

836212

103860551

100232953

100257072

100232952

107893801

106428477

106439964

102615519

102612359

102578018

543887

543839

102577795

102583048

107774027

4334140

4342214

542257

541765

542032

543351

780641

543103

123452274

8085925

8054531

100842079

100845222

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AP1A (gma-u.5 coexpression data)

Top 50 enrichment test to AP1A (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	bra	vvi	ghi	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	bna
Paralog	6	1	1	2	1	3	2	3	1	2	1	2	3	3	1	2	2	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AP1A (gma-u.5 coexpression data)

Top 50 enrichment test to AP1A (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**