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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100817441   putative E3 ubiquitin-protein ligase UBR7-like 
 gma-r.7   100817441   putative E3 ubiquitin-protein ligase UBR7-like 
 gma-m.5   100817441   putative E3 ubiquitin-protein ligase UBR7-like 
 gma-u.5   100527913   putative E3 ubiquitin-protein ligase UBR7 
 mtr-u.5   11427483   putative E3 ubiquitin-protein ligase UBR7 
 ppo-u.5   7467089   uncharacterized LOC7467089 
 ppo-u.5   7465318   uncharacterized LOC7465318 
 ath-u.5   AT4G23860   PHD finger protein-like protein 
 vvi-u.5   100242771   uncharacterized LOC100242771 
 sly-u.5   101256507   uncharacterized LOC101256507 
 osa-u.5   4341197   uncharacterized LOC4341197 
 zma-u.5   100274433   PHD finger protein-related 

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Top 50 coexpressed genes to 100817441 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100817441 (gma-u.5 coexpression data)

CoexMap"100817441"


gmaLOC100817441 | Entrez gene ID : 100817441      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (292 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1182 genes)  IEA  
Protein NP_001242007.2 [sequence] [blastp]
NP_001354205.1 [sequence] [blastp]
XP_006572892.1 [sequence] [blastp]
XP_006572893.1 [sequence] [blastp]
XP_006572894.1 [sequence] [blastp]
XP_040861550.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  plas 1,  vacu 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_001242007.2)
nucl 7,  cyto 1,  plas 1,  vacu 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for NP_001354205.1)
nucl 7,  cyto 1,  plas 1,  vacu 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_006572892.1)
nucl 7,  cyto 1,  plas 1,  vacu 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_006572893.1)
nucl 7,  cyto 1,  plas 1,  vacu 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_006572894.1)
nucl 7,  cyto 1,  plas 1,  vacu 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_040861550.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001242007.2)
other 8  (predict for NP_001354205.1)
other 8  (predict for XP_006572892.1)
other 8  (predict for XP_006572893.1)
other 8  (predict for XP_006572894.1)
other 8  (predict for XP_040861550.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100817441

.
gma-r.7
for
100817441

.
gma-m.5
for
100817441

.
gma-u.5
for
100527913

.
mtr-u.5
for
11427483

.
ppo-u.5
for
7467089

.
ppo-u.5
for
7465318

.
ath-u.5
for
AT4G23860

.
vvi-u.5
for
100242771

.
sly-u.5
for
101256507

.
osa-u.5
for
4341197

.
zma-u.5
for
100274433

.


Ortholog ID: 9607
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT4G23860 LOC100817441 LOC100527913 LOC101256507 LOC4341197 LOC100274433 LOC103861481 LOC100242771 LOC7467089 LOC7465318 LOC11427483 LOC123156743 LOC123147925 LOC123406989 LOC107947121 LOC121224336 LOC106441502 LOC106375991 LOC8072631 LOC102587881 LOC102610169 LOC100832115 LOC107824603 LOC107819244
Function* PHD finger protein-like protein putative E3 ubiquitin-protein ligase UBR7-like putative E3 ubiquitin-protein ligase UBR7 uncharacterized LOC101256507 uncharacterized LOC4341197 PHD finger protein-related putative E3 ubiquitin-protein ligase UBR7 uncharacterized LOC100242771 uncharacterized LOC7467089 uncharacterized LOC7465318 putative E3 ubiquitin-protein ligase UBR7 putative E3 ubiquitin-protein ligase UBR7 putative E3 ubiquitin-protein ligase UBR7 putative E3 ubiquitin-protein ligase UBR7 putative E3 ubiquitin-protein ligase UBR7 putative E3 ubiquitin-protein ligase UBR7 putative E3 ubiquitin-protein ligase UBR7 putative E3 ubiquitin-protein ligase UBR7 putative E3 ubiquitin-protein ligase UBR7 putative E3 ubiquitin-protein ligase UBR7 uncharacterized LOC102610169 putative E3 ubiquitin-protein ligase UBR7 uncharacterized LOC107824603 uncharacterized LOC107819244
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 7
ath03030 DNA replication 6
ath03430 Mismatch repair 5
ath03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 3
gma03420 Nucleotide excision repair 3
gma03430 Mismatch repair 3
gma03410 Base excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 10
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03430 Mismatch repair 7
vvi03030 DNA replication 6
vvi03420 Nucleotide excision repair 6
vvi03410 Base excision repair 4
vvi03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
hvu03013 Nucleocytoplasmic transport 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 5
ghi03420 Nucleotide excision repair 5
ghi03430 Mismatch repair 5
ghi03410 Base excision repair 3
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 7
ghi03420 Nucleotide excision repair 7
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 5
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 4
sbi03040 Spliceosome 3
sbi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 2
sot03030 DNA replication 2
sot03410 Base excision repair 2
sot03420 Nucleotide excision repair 2
sot03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
cit03013 Nucleocytoplasmic transport 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 3
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03015 mRNA surveillance pathway 2
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828485 100817441 100527913 101256507 4341197 100274433 103861481 100242771 7467089 7465318 11427483 123156743 123147925 123406989 107947121 121224336 106441502 106375991 8072631 102587881 102610169 100832115 107824603 107819244
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