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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   RCA11   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 
 gma-r.7   RCA11   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 
 gma-u.5   RCAALPHA   ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like 
 gma-u.5   RCA14   ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like 
 gma-u.5   RCABETA   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 
 mtr-u.5   25489329   ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic 
 mtr-u.5   11442149   ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic 
 mtr-u.5   11412610   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 ppo-u.5   7487971   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 ppo-u.5   7458129   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 ath-u.5   RCA   rubisco activase 
 vvi-u.5   100263871   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 vvi-u.5   100256315   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 vvi-u.5   100266698   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 sly-u.5   101250725   ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic 
 sly-u.5   101249777   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 osa-u.5   4351224   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 
 zma-u.5   541712   RUBISCO activase 1 
 zma-u.5   100382265   RUBISCO activase1 

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Top 50 coexpressed genes to RCA11 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RCA11 (gma-u.5 coexpression data)

CoexMap"100818034"


gmaRCA11 | Entrez gene ID : 100818034      
Species gma mtr ppo ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 5 3 2 1 3 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009570 [list] [network] chloroplast stroma  (198 genes)  IEA  
GO:0009579 [list] [network] thylakoid  (327 genes)  IEA  
GO MF
GO:0046863 [list] [network] ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity  (6 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (756 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (3753 genes)  IEA  
Protein NP_001240245.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001240245.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001240245.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
RCA11
gma-r.7
for
RCA11
gma-u.5
for
RCAALPHA
gma-u.5
for
RCA14
gma-u.5
for
RCABETA
mtr-u.5
for
25489329
mtr-u.5
for
11442149
mtr-u.5
for
11412610
ppo-u.5
for
7487971
ppo-u.5
for
7458129
ath-u.5
for
RCA
vvi-u.5
for
100263871
vvi-u.5
for
100256315
vvi-u.5
for
100266698
sly-u.5
for
101250725
sly-u.5
for
101249777
osa-u.5
for
4351224
zma-u.5
for
541712
zma-u.5
for
100382265


Ortholog ID: 2625
Species gma gma mtr mtr ppo ath bra bra vvi vvi ghi ghi bna bna cit cit sly sly sot sot nta nta osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol RCABETA RCAALPHA LOC11412610 LOC25489329 LOC7458129 RCA LOC103867016 RCA LOC100256315 LOC100263871 LOC107948056 LOC107900463 LOC106396217 LOC106447457 LOC102630057 LOC102627294 LOC101250725 LOC101249777 LOC102590242 LOC102596435 LOC107793435 LOC107819807 LOC4351224 LOC541712 LOC100382265 LOC732707 LOC123091750 LOC123448238 LOC123448239 LOC8086040 LOC8086041 LOC104584416 LOC100836073 CHLRE_04g229300v5
Function* ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic rubisco activase ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like RUBISCO activase 1 RUBISCO activase1 ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 7
gma01200 Carbon metabolism 7
gma00195 Photosynthesis 2
gma00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 4
mtr00710 Carbon fixation by Calvin cycle 3
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 8
mtr00710 Carbon fixation by Calvin cycle 6
mtr00010 Glycolysis / Gluconeogenesis 3
mtr00030 Pentose phosphate pathway 3
mtr00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 7
ppo00710 Carbon fixation by Calvin cycle 6
ppo00630 Glyoxylate and dicarboxylate metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00710 Carbon fixation by Calvin cycle 10
ath01200 Carbon metabolism 10
ath00195 Photosynthesis 6
ath01230 Biosynthesis of amino acids 3
ath00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 4
bra00195 Photosynthesis 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
bra00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 9
bra01200 Carbon metabolism 9
bra00195 Photosynthesis 6
bra00010 Glycolysis / Gluconeogenesis 4
bra01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 10
vvi00710 Carbon fixation by Calvin cycle 9
vvi00010 Glycolysis / Gluconeogenesis 3
vvi00030 Pentose phosphate pathway 3
vvi00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 11
vvi00710 Carbon fixation by Calvin cycle 9
vvi00010 Glycolysis / Gluconeogenesis 4
vvi00030 Pentose phosphate pathway 3
vvi00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00052 Galactose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 3
ghi00195 Photosynthesis 3
ghi00620 Pyruvate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
cit00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 10
cit01200 Carbon metabolism 6
cit00710 Carbon fixation by Calvin cycle 4
cit00010 Glycolysis / Gluconeogenesis 3
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00710 Carbon fixation by Calvin cycle 5
sly01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 12
sly00710 Carbon fixation by Calvin cycle 11
sly00030 Pentose phosphate pathway 5
sly00010 Glycolysis / Gluconeogenesis 4
sly00051 Fructose and mannose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 7
sot00195 Photosynthesis 6
sot00710 Carbon fixation by Calvin cycle 5
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 8
sot00710 Carbon fixation by Calvin cycle 7
sot00630 Glyoxylate and dicarboxylate metabolism 5
sot00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 4
nta00630 Glyoxylate and dicarboxylate metabolism 3
nta04146 Peroxisome 3
nta00380 Tryptophan metabolism 2
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 4
nta01200 Carbon metabolism 4
nta04146 Peroxisome 4
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 8
osa00710 Carbon fixation by Calvin cycle 7
osa00195 Photosynthesis 4
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 11
zma00710 Carbon fixation by Calvin cycle 10
zma00630 Glyoxylate and dicarboxylate metabolism 3
zma00010 Glycolysis / Gluconeogenesis 3
zma00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 9
zma00710 Carbon fixation by Calvin cycle 7
zma00630 Glyoxylate and dicarboxylate metabolism 3
zma00195 Photosynthesis 3
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 6
tae00710 Carbon fixation by Calvin cycle 4
tae00260 Glycine, serine and threonine metabolism 2
tae00630 Glyoxylate and dicarboxylate metabolism 2
tae00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 6
tae00710 Carbon fixation by Calvin cycle 4
tae00195 Photosynthesis 3
tae00260 Glycine, serine and threonine metabolism 2
tae00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 9
hvu00710 Carbon fixation by Calvin cycle 6
hvu00630 Glyoxylate and dicarboxylate metabolism 6
hvu00195 Photosynthesis 4
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 8
hvu00630 Glyoxylate and dicarboxylate metabolism 7
hvu00710 Carbon fixation by Calvin cycle 4
hvu00260 Glycine, serine and threonine metabolism 4
hvu00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 5
sbi00196 Photosynthesis - antenna proteins 5
sbi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 3
sbi00860 Porphyrin metabolism 2
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 9
bdi00630 Glyoxylate and dicarboxylate metabolism 8
bdi00710 Carbon fixation by Calvin cycle 6
bdi00260 Glycine, serine and threonine metabolism 2
bdi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 6
bdi00630 Glyoxylate and dicarboxylate metabolism 4
bdi00195 Photosynthesis 2
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 7
cre01200 Carbon metabolism 7
cre00030 Pentose phosphate pathway 4
cre01230 Biosynthesis of amino acids 3
cre00500 Starch and sucrose metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100797222 100806240 11412610 25489329 7458129 818558 103867016 103865740 100256315 100263871 107948056 107900463 106396217 106447457 102630057 102627294 101250725 101249777 102590242 102596435 107793435 107819807 4351224 541712 100382265 732707 123091750 123448238 123448239 8086040 8086041 104584416 100836073 5717936
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