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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100818483   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like 
 gma-r.7   100818483   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like 
 gma-m.5   100818483   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like 
 mtr-u.5   25493426   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 ppo-u.5   18106370   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 ppo-u.5   7465605   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 ath-u.5   COS1   6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase 
 bra-r.6   103866118   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 bra-r.6   103858114   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 vvi-u.5   100243902   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 ghi-r.1   107933330   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 ghi-r.1   107904594   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 ghi-r.1   107923260   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 bna-r.1   106429213   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 bna-r.1   106438205   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 bna-r.1   106388060   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 cit-r.1   102607813   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 sly-u.5   101259864   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 sly-u.5   101251867   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 sot-r.1   102603912   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like 
 sot-r.1   102588039   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 nta-r.1   107830522   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like 
 nta-r.1   107812499   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 nta-r.1   107799637   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 osa-u.5   4336286   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 zma-u.5   100283301   6,7-dimethyl-8-ribityllumazine synthase 
 zma-u.5   100192579   6,7-dimethyl-8-ribityllumazine synthase 
 tae-r.2   123189649   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 tae-r.2   123053774   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 tae-r.2   123045905   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 hvu-r.1   123427126   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like 
 hvu-r.1   123427136   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like 
 sbi-r.1   8079602   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 sbi-r.1   8063397   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 bdi-r.1   100829053   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 bdi-r.1   100845616   6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 
 cre-r.1   CHLRE_02g088850v5   uncharacterized protein 

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Top 50 coexpressed genes to 100818483 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100818483 (gma-u.5 coexpression data)

CoexMap"100818483"


gmaLOC100818483 | Entrez gene ID : 100818483      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 2 1 2 1 3 3 1 2 2 3 1 2 3 2 2 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00740 [list] [network] Riboflavin metabolism (39 genes)
gmx01240 [list] [network] Biosynthesis of cofactors (475 genes)
GO BP
GO:0009231 [list] [network] riboflavin biosynthetic process  (18 genes)  IEA  
GO CC
GO:0009349 [list] [network] riboflavin synthase complex  (2 genes)  IEA  
GO:0005622 [list] [network] intracellular anatomical structure  (14557 genes)  IEA  
GO MF
GO:0000906 [list] [network] 6,7-dimethyl-8-ribityllumazine synthase activity  (2 genes)  IEA  
Protein NP_001242076.2 [sequence] [blastp]
NP_001335646.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  extr 4,  chlo 3  (predict for NP_001242076.2)
cyto 4,  extr 4,  chlo 3  (predict for NP_001335646.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001242076.2)
chlo 8  (predict for NP_001335646.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100818483
gma-r.7
for
100818483
gma-m.5
for
100818483
mtr-u.5
for
25493426
ppo-u.5
for
18106370
ppo-u.5
for
7465605
ath-u.5
for
COS1
bra-r.6
for
103866118
bra-r.6
for
103858114
vvi-u.5
for
100243902
ghi-r.1
for
107933330
ghi-r.1
for
107904594
ghi-r.1
for
107923260
bna-r.1
for
106429213
bna-r.1
for
106438205
bna-r.1
for
106388060
cit-r.1
for
102607813
sly-u.5
for
101259864
sly-u.5
for
101251867
sot-r.1
for
102603912
sot-r.1
for
102588039
nta-r.1
for
107830522
nta-r.1
for
107812499
nta-r.1
for
107799637
osa-u.5
for
4336286
zma-u.5
for
100283301
zma-u.5
for
100192579
tae-r.2
for
123189649
tae-r.2
for
123053774
tae-r.2
for
123045905
hvu-r.1
for
123427126
hvu-r.1
for
123427136
sbi-r.1
for
8079602
sbi-r.1
for
8063397
bdi-r.1
for
100829053
bdi-r.1
for
100845616
cre-r.1
for
CHLRE_02g088850v5


Ortholog ID: 4705
Species gma mtr ppo ppo ath bra bra vvi ghi ghi ghi bna bna bna cit sly sly sot sot nta nta nta osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC100818483 LOC25493426 LOC18106370 LOC7465605 COS1 LOC103866118 LOC103858114 LOC100243902 LOC107904594 LOC107923260 LOC107898667 LOC106429213 LOC106438205 LOC111215186 LOC102607813 LOC101259864 LOC101251867 LOC102603912 LOC102588039 LOC107812499 LOC107799637 LOC107761937 LOC4336286 LOC100283301 LOC100192579 LOC123189649 LOC123053774 LOC123045905 LOC123427126 LOC123427136 LOC8079602 LOC8063397 LOC100829053 LOC100845616 CHLRE_02g088850v5
Function* 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase 6,7-dimethyl-8-ribityllumazine synthase 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma01210 2-Oxocarboxylic acid metabolism 4
gma01230 Biosynthesis of amino acids 4
gma00010 Glycolysis / Gluconeogenesis 3
gma00020 Citrate cycle (TCA cycle) 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00740 Riboflavin metabolism 5
mtr01240 Biosynthesis of cofactors 5
mtr00790 Folate biosynthesis 2
mtr00940 Phenylpropanoid biosynthesis 2
mtr00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 11
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo00620 Pyruvate metabolism 2
ppo01200 Carbon metabolism 2
ppo03050 Proteasome 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 9
ath01240 Biosynthesis of cofactors 5
ath01210 2-Oxocarboxylic acid metabolism 4
ath00061 Fatty acid biosynthesis 4
ath00780 Biotin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 6
bra04145 Phagosome 3
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra01240 Biosynthesis of cofactors 4
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04146 Peroxisome 2
vvi03010 Ribosome 2
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00740 Riboflavin metabolism 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00740 Riboflavin metabolism 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00740 Riboflavin metabolism 4
ghi01240 Biosynthesis of cofactors 4
ghi04146 Peroxisome 2
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 6
bna00740 Riboflavin metabolism 4
bna01240 Biosynthesis of cofactors 4
bna00300 Lysine biosynthesis 4
bna00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 6
bna00740 Riboflavin metabolism 4
bna01240 Biosynthesis of cofactors 4
bna00300 Lysine biosynthesis 4
bna00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 6
bna00740 Riboflavin metabolism 4
bna01240 Biosynthesis of cofactors 4
bna00300 Lysine biosynthesis 4
bna00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 5
sly00900 Terpenoid backbone biosynthesis 2
sly00061 Fatty acid biosynthesis 2
sly00780 Biotin metabolism 2
sly01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 4
sly01240 Biosynthesis of cofactors 4
sly01200 Carbon metabolism 3
sly00010 Glycolysis / Gluconeogenesis 2
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04145 Phagosome 4
sot00190 Oxidative phosphorylation 3
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00740 Riboflavin metabolism 2
sot01240 Biosynthesis of cofactors 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 6
nta00740 Riboflavin metabolism 4
nta00190 Oxidative phosphorylation 4
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 6
nta00190 Oxidative phosphorylation 5
nta00740 Riboflavin metabolism 4
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 5
osa01240 Biosynthesis of cofactors 3
osa00020 Citrate cycle (TCA cycle) 3
osa01200 Carbon metabolism 3
osa00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 7
zma00230 Purine metabolism 5
zma00730 Thiamine metabolism 5
zma01232 Nucleotide metabolism 5
zma00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 6
zma01210 2-Oxocarboxylic acid metabolism 5
zma00020 Citrate cycle (TCA cycle) 5
zma00785 Lipoic acid metabolism 4
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 6
tae00270 Cysteine and methionine metabolism 5
tae01240 Biosynthesis of cofactors 4
tae00740 Riboflavin metabolism 3
tae00020 Citrate cycle (TCA cycle) 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 6
tae01240 Biosynthesis of cofactors 5
tae03010 Ribosome 4
tae00190 Oxidative phosphorylation 4
tae00740 Riboflavin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 6
tae01230 Biosynthesis of amino acids 4
tae00270 Cysteine and methionine metabolism 4
tae00770 Pantothenate and CoA biosynthesis 3
tae00340 Histidine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00220 Arginine biosynthesis 3
hvu00250 Alanine, aspartate and glutamate metabolism 3
hvu01230 Biosynthesis of amino acids 3
hvu00190 Oxidative phosphorylation 3
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 6
sbi00740 Riboflavin metabolism 2
sbi01240 Biosynthesis of cofactors 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00740 Riboflavin metabolism 2
sbi01240 Biosynthesis of cofactors 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 5
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 3
cre01240 Biosynthesis of cofactors 2
cre00190 Oxidative phosphorylation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100818483 25493426 18106370 7465605 819010 103866118 103858114 100243902 107904594 107923260 107898667 106429213 106438205 111215186 102607813 101259864 101251867 102603912 102588039 107812499 107799637 107761937 4336286 100283301 100192579 123189649 123053774 123045905 123427126 123427136 8079602 8063397 100829053 100845616 5727444
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