ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100819317	uncharacterized LOC100819317
gma-r.7	100819317	uncharacterized LOC100819317
gma-u.5	100802229	uncharacterized LOC100802229
gma-u.5	100787520	uncharacterized LOC100787520
gma-u.5	100782217	uncharacterized LOC100782217
mtr-u.5	11410178	uncharacterized LOC11410178
mtr-u.5	11438298	uncharacterized LOC11438298
ppo-u.5	7457924	uncharacterized LOC7457924
ppo-u.5	7489593	uncharacterized LOC7489593
ppo-u.5	7489275	uncharacterized LOC7489275
ath-u.5	AT5G59830	DNA-binding protein
bra-r.6	103851542	uncharacterized LOC103851542
vvi-u.5	100260456	uncharacterized LOC100260456
ghi-r.1	107904115	uncharacterized LOC107904115
ghi-r.1	107886194	uncharacterized LOC107886194
ghi-r.1	107959087	uncharacterized LOC107959087
bna-r.1	106385494	uncharacterized LOC106385494
bna-r.1	106357797	uncharacterized LOC106357797
cit-r.1	102624362	uncharacterized LOC102624362
sly-u.5	101254101	uncharacterized LOC101254101
sot-r.1	102583417	uncharacterized LOC102583417
nta-r.1	107826048	uncharacterized LOC107826048
nta-r.1	107808368	uncharacterized LOC107808368
nta-r.1	142170804	uncharacterized LOC142170804

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(294 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0042393 [list] [network] histone binding	(111 genes)	IEA
GO:0003682 [list] [network] chromatin binding	(270 genes)	IEA
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding	(500 genes)	IEA

Protein

XP_006592206.1 [sequence] [blastp]
XP_006592207.1 [sequence] [blastp]
XP_014620022.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 1, pero 1, cyto_pero 1	(predict for XP_006592206.1)
nucl 6, chlo 1, pero 1, cyto 1, vacu 1, chlo_mito 1	(predict for XP_006592207.1)
nucl 6, cyto 1, pero 1, cyto_pero 1	(predict for XP_014620022.1)

Subcellular
localization
TargetP

other 8	(predict for XP_006592206.1)
other 9	(predict for XP_006592207.1)
other 8	(predict for XP_014620022.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100819317	gma-r.7 for 100819317	gma-u.5 for 100802229	gma-u.5 for 100787520	gma-u.5 for 100782217	mtr-u.5 for 11410178	mtr-u.5 for 11438298	ppo-u.5 for 7457924	ppo-u.5 for 7489593	ppo-u.5 for 7489275	ath-u.5 for AT5G59830	bra-r.6 for 103851542	vvi-u.5 for 100260456	ghi-r.1 for 107904115	ghi-r.1 for 107886194	ghi-r.1 for 107959087	bna-r.1 for 106385494	bna-r.1 for 106357797	cit-r.1 for 102624362	sly-u.5 for 101254101	sot-r.1 for 102583417	nta-r.1 for 107826048	nta-r.1 for 107808368	nta-r.1 for 142170804

Ortholog

Ortholog ID: 9182

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

Symbol

Function^*

uncharacterized LOC100819317

uncharacterized LOC100787520

uncharacterized LOC100782217

uncharacterized LOC11410178

uncharacterized LOC11438298

uncharacterized LOC7457924

uncharacterized LOC7489593

uncharacterized LOC7485723

DNA-binding protein

uncharacterized LOC103851542

uncharacterized LOC100260456

uncharacterized LOC107959087

uncharacterized LOC107960087

uncharacterized LOC107906159

uncharacterized LOC106385494

uncharacterized LOC106357797

uncharacterized LOC102624362

uncharacterized LOC101254101

uncharacterized LOC102583417

uncharacterized LOC107826048

uncharacterized LOC107808368

uncharacterized LOC142170804

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2
ppo04136	Autophagy - other	2
ppo04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta04075	Plant hormone signal transduction	2
nta04145	Phagosome	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta04075	Plant hormone signal transduction	2
nta04144	Endocytosis	2
nta04145	Phagosome	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2
nta04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

100819317

100787520

100782217

11410178

11438298

7457924

7489593

7485723

836104

103851542

100260456

107959087

107960087

107906159

106385494

106357797

102624362

101254101

102583417

107826048

107808368

142170804

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100819317 (gma-u.5 coexpression data)

Top 50 enrichment test to 100819317 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	bdi	osa	tae	zma	cre	sbi	hvu
Paralog	5	2	3	1	1	1	3	2	1	1	1	3	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100819317 (gma-u.5 coexpression data)

Top 50 enrichment test to 100819317 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**