Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100819402   carbon catabolite repressor protein 4 homolog 1 
 gma-r.7   100819402   carbon catabolite repressor protein 4 homolog 1 
 gma-m.5   100819402   carbon catabolite repressor protein 4 homolog 1 
 gma-u.5   100775270   carbon catabolite repressor protein 4 homolog 1 
 gma-u.5   100808935   carbon catabolite repressor protein 4 homolog 1 
 mtr-u.5   25499554   carbon catabolite repressor protein 4 homolog 1 
 mtr-u.5   25483567   carbon catabolite repressor protein 4 homolog 2 
 ppo-u.5   7469907   carbon catabolite repressor protein 4 homolog 1 
 ppo-u.5   7479509   carbon catabolite repressor protein 4 homolog 1 
 ath-u.5   AT3G58560   DNAse I-like superfamily protein 
 ath-u.5   AT3G58580   DNAse I-like superfamily protein 
 bra-r.6   103862977   carbon catabolite repressor protein 4 homolog 2 
 bra-r.6   103841733   carbon catabolite repressor protein 4 homolog 2 
 bra-r.6   103830169   carbon catabolite repressor protein 4 homolog 2 
 vvi-u.5   100265801   carbon catabolite repressor protein 4 homolog 1 
 ghi-r.1   107948232   carbon catabolite repressor protein 4 homolog 1 
 ghi-r.1   107889486   carbon catabolite repressor protein 4 homolog 1 
 ghi-r.1   107891241   carbon catabolite repressor protein 4 homolog 1 
 bna-r.1   106418709   carbon catabolite repressor protein 4 homolog 1 
 bna-r.1   106415824   carbon catabolite repressor protein 4 homolog 2 
 bna-r.1   106432620   carbon catabolite repressor protein 4 homolog 2 
 cit-r.1   102615682   carbon catabolite repressor protein 4 homolog 1 
 sly-u.5   101255473   carbon catabolite repressor protein 4 homolog 1-like 
 sly-u.5   101256818   carbon catabolite repressor protein 4 homolog 1 
 sot-r.1   102601337   carbon catabolite repressor protein 4 homolog 1-like 
 sot-r.1   102598581   carbon catabolite repressor protein 4 homolog 1-like 
 nta-r.1   107777079   carbon catabolite repressor protein 4 homolog 1 
 nta-r.1   107761103   carbon catabolite repressor protein 4 homolog 1 
 nta-r.1   107759403   carbon catabolite repressor protein 4 homolog 1-like 
 osa-u.5   4331740   carbon catabolite repressor protein 4 homolog 1 
 osa-u.5   4348610   carbon catabolite repressor protein 4 homolog 1 
 zma-u.5   100280629   CCR4-NOT transcription complex subunit 6 
 zma-u.5   100279717   uncharacterized LOC100279717 
 zma-u.5   100279626   uncharacterized LOC100279626 
 tae-r.2   123180866   carbon catabolite repressor protein 4 homolog 1 
 tae-r.2   123118223   carbon catabolite repressor protein 4 homolog 1 
 tae-r.2   123043896   carbon catabolite repressor protein 4 homolog 1 
 hvu-r.1   123429162   carbon catabolite repressor protein 4 homolog 1-like 
 sbi-r.1   110429948   carbon catabolite repressor protein 4 homolog 1-like 
 sbi-r.1   8066931   carbon catabolite repressor protein 4 homolog 1 
 bdi-r.1   100820928   carbon catabolite repressor protein 4 homolog 1 
 cre-r.1   CHLRE_11g475900v5   uncharacterized protein 

close


Top 50 coexpressed genes to 100819402 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 100819402 (gma-u.5 coexpression data)

CoexMap"100819402"


gmaLOC100819402 | Entrez gene ID : 100819402      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 5 2 2 2 3 1 3 3 1 2 2 3 2 3 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03018 [list] [network] RNA degradation (191 genes)
GO BP
GO:0000289 [list] [network] nuclear-transcribed mRNA poly(A) tail shortening  (11 genes)  IEA  
GO CC
GO:0030014 [list] [network] CCR4-NOT complex  (41 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0004535 [list] [network] poly(A)-specific ribonuclease activity  (14 genes)  IEA  
Protein XP_003533908.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 2,  nucl 2,  plas 2,  nucl_plas 2,  cyto 1,  chlo_mito 1,  cysk_nucl 1,  cysk_plas 1,  mito_plas 1  (predict for XP_003533908.1)
Subcellular
localization
TargetP
other 7  (predict for XP_003533908.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100819402
gma-r.7
for
100819402
gma-m.5
for
100819402
gma-u.5
for
100775270
gma-u.5
for
100808935
mtr-u.5
for
25499554
mtr-u.5
for
25483567
ppo-u.5
for
7469907
ppo-u.5
for
7479509
ath-u.5
for
AT3G58560
ath-u.5
for
AT3G58580
bra-r.6
for
103862977
bra-r.6
for
103841733
bra-r.6
for
103830169
vvi-u.5
for
100265801
ghi-r.1
for
107948232
ghi-r.1
for
107889486
ghi-r.1
for
107891241
bna-r.1
for
106418709
bna-r.1
for
106415824
bna-r.1
for
106432620
cit-r.1
for
102615682
sly-u.5
for
101255473
sly-u.5
for
101256818
sot-r.1
for
102601337
sot-r.1
for
102598581
nta-r.1
for
107777079
nta-r.1
for
107761103
nta-r.1
for
107759403
osa-u.5
for
4331740
osa-u.5
for
4348610
zma-u.5
for
100280629
zma-u.5
for
100279717
zma-u.5
for
100279626
tae-r.2
for
123180866
tae-r.2
for
123118223
tae-r.2
for
123043896
hvu-r.1
for
123429162
sbi-r.1
for
110429948
sbi-r.1
for
8066931
bdi-r.1
for
100820928
cre-r.1
for
CHLRE_11g475900v5


Ortholog ID: 3819
Species gma gma gma mtr mtr ppo ppo ath ath bra bra bra vvi ghi ghi ghi bna bna bna cit sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC100819402 LOC100775270 LOC100808935 LOC25499554 LOC25483567 LOC7469907 LOC7479509 AT3G58560 AT3G58580 LOC103862977 LOC103830169 LOC103830166 LOC100265801 LOC107891241 LOC107899210 LOC107922222 LOC106418709 LOC106353185 LOC106353187 LOC102615682 LOC101255473 LOC101256818 LOC102601337 LOC102598581 LOC107777079 LOC107759403 LOC107819159 LOC4331740 LOC4348610 LOC100280629 LOC100279717 LOC100279626 LOC123180866 LOC123118223 LOC123043896 LOC123429162 LOC110429948 LOC8066931 LOC100820928 CHLRE_11g475900v5
Function* carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 2 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 DNAse I-like superfamily protein DNAse I-like superfamily protein carbon catabolite repressor protein 4 homolog 2 carbon catabolite repressor protein 4 homolog 2 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 2 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 CCR4-NOT transcription complex subunit 6 uncharacterized LOC100279717 uncharacterized LOC100279626 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1-like carbon catabolite repressor protein 4 homolog 1 carbon catabolite repressor protein 4 homolog 1 uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04120 Ubiquitin mediated proteolysis 2
gma00260 Glycine, serine and threonine metabolism 2
gma00460 Cyanoamino acid metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 6
gma03015 mRNA surveillance pathway 3
gma04382 Cornified envelope formation 3
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 3
mtr04141 Protein processing in endoplasmic reticulum 2
mtr04070 Phosphatidylinositol signaling system 2
mtr04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
mtr03050 Proteasome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03013 Nucleocytoplasmic transport 2
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 6
ppo04142 Lysosome 5
ppo05100 Bacterial invasion of epithelial cells 3
ppo04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 7
ppo03420 Nucleotide excision repair 3
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 5
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra04075 Plant hormone signal transduction 2
bra04626 Plant-pathogen interaction 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 7
bra03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 5
ghi04146 Peroxisome 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 5
ghi04146 Peroxisome 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 5
ghi04146 Peroxisome 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03050 Proteasome 3
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 3
sly04144 Endocytosis 3
sly03250 Viral life cycle - HIV-1 2
sly03272 Virion - Hepatitis viruses 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 5
sot04120 Ubiquitin mediated proteolysis 3
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03083 Polycomb repressive complex 3
sot04712 Circadian rhythm - plant 3
sot03018 RNA degradation 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 5
nta00900 Terpenoid backbone biosynthesis 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 5
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 5
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 5
zma03018 RNA degradation 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae03018 RNA degradation 3
tae00510 N-Glycan biosynthesis 2
tae00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae03018 RNA degradation 3
tae00510 N-Glycan biosynthesis 2
tae00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03018 RNA degradation 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 3
cre03040 Spliceosome 2
cre03015 mRNA surveillance pathway 2
cre04382 Cornified envelope formation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100819402 100775270 100808935 25499554 25483567 7469907 7479509 825025 825027 103862977 103830169 103830166 100265801 107891241 107899210 107922222 106418709 106353185 106353187 102615682 101255473 101256818 102601337 102598581 107777079 107759403 107819159 4331740 4348610 100280629 100279717 100279626 123180866 123118223 123043896 123429162 110429948 8066931 100820928 5727565
The preparation time of this page was 0.1 [sec].