ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100822149	extensin-3
bdi-r.1	100834009	uncharacterized LOC100834009
tae-r.2	123163959	uncharacterized LOC123163959
tae-r.2	123105698	extensin
tae-r.2	123114029	uncharacterized LOC123114029
hvu-r.1	123413371	uncharacterized LOC123413371
hvu-r.1	123453072	B2 protein-like
hvu-r.1	123453084	leucine-rich repeat extensin-like protein 1
osa-u.5	4340554	uncharacterized LOC4340554
osa-u.5	4330717	uncharacterized LOC4330717
osa-u.5	4350618	uncharacterized LOC4350618
zma-u.5	100278526	uncharacterized LOC100278526
zma-u.5	103627723	uncharacterized LOC103627723
zma-u.5	100502502	DCD (Development and Cell Death) domain protein
sbi-r.1	8066434	uncharacterized LOC8066434
sbi-r.1	8064791	uncharacterized LOC8064791
sbi-r.1	8065522	uncharacterized LOC8065522
ath-u.5	AT2G32910	DCD (Development and Cell Death) domain protein
gma-u.5	106798439	uncharacterized LOC106798439
gma-u.5	100804883	DCD domain-containing protein NRP-A-like
gma-u.5	100798367	uncharacterized LOC100798367
sly-u.5	104648045	uncharacterized LOC104648045
sly-u.5	101262857	uncharacterized LOC101262857
sly-u.5	101252886	uncharacterized LOC101252886
bra-r.6	103838723	uncharacterized LOC103838723
vvi-u.5	104881437	uncharacterized LOC104881437
vvi-u.5	104881642	uncharacterized LOC104881642
ppo-u.5	7473888	DCD domain-containing protein NRP-A
ppo-u.5	18094118	uncharacterized LOC18094118
mtr-u.5	25488602	uncharacterized LOC25488602
mtr-u.5	25488603	uncharacterized LOC25488603
mtr-u.5	11434551	uncharacterized LOC11434551
ghi-r.1	107939833	uncharacterized LOC107939833
ghi-r.1	107937150	uncharacterized LOC107937150
ghi-r.1	107931460	uncharacterized LOC107931460
bna-r.1	125592403	uncharacterized LOC125592403
bna-r.1	106433779	uncharacterized LOC106433779
bna-r.1	111197919	uncharacterized LOC111197919
sot-r.1	102592789	uncharacterized LOC102592789
sot-r.1	102605831	uncharacterized LOC102605831
cit-r.1	102608495	uncharacterized LOC102608495
cit-r.1	102611357	uncharacterized LOC102611357
cit-r.1	102620019	uncharacterized LOC102620019
nta-r.1	107779048	uncharacterized LOC107779048
nta-r.1	107783669	uncharacterized LOC107783669
nta-r.1	107799715	uncharacterized LOC107799715

Top 50 coexpressed genes to 100822149 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100822149 (bdi-r.1 coexpression data)

CoexMap"100822149"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_010237686.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, nucl_plas 3, chlo 2, cyto 1

(predict for XP_010237686.1)

Subcellular
localization
TargetP

chlo 7, other 3

(predict for XP_010237686.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100822149	bdi-r.1 for 100834009	tae-r.2 for 123163959	tae-r.2 for 123105698	tae-r.2 for 123114029	hvu-r.1 for 123413371	hvu-r.1 for 123453072	hvu-r.1 for 123453084	osa-u.5 for 4340554	osa-u.5 for 4330717	osa-u.5 for 4350618	zma-u.5 for 100278526	zma-u.5 for 103627723	zma-u.5 for 100502502	sbi-r.1 for 8066434	sbi-r.1 for 8064791	sbi-r.1 for 8065522	ath-u.5 for AT2G32910	gma-u.5 for 106798439	gma-u.5 for 100804883	gma-u.5 for 100798367	sly-u.5 for 104648045	sly-u.5 for 101262857	sly-u.5 for 101252886	bra-r.6 for 103838723	vvi-u.5 for 104881437	vvi-u.5 for 104881642	ppo-u.5 for 7473888	ppo-u.5 for 18094118	mtr-u.5 for 25488602	mtr-u.5 for 25488603	mtr-u.5 for 11434551	ghi-r.1 for 107939833	ghi-r.1 for 107937150	ghi-r.1 for 107931460	bna-r.1 for 125592403	bna-r.1 for 106433779	bna-r.1 for 111197919	sot-r.1 for 102592789	sot-r.1 for 102605831	cit-r.1 for 102608495	cit-r.1 for 102611357	cit-r.1 for 102620019	nta-r.1 for 107779048	nta-r.1 for 107783669	nta-r.1 for 107799715

Ortholog

Ortholog ID: 1962

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

extensin-3

uncharacterized LOC100834009

uncharacterized LOC123163959

uncharacterized LOC123114029

uncharacterized LOC123145494

uncharacterized LOC123413371

B2 protein-like

leucine-rich repeat extensin-like protein 1

uncharacterized LOC4340554

uncharacterized LOC4330717

uncharacterized LOC4350618

uncharacterized LOC103627723

DCD (Development and Cell Death) domain protein

uncharacterized LOC100276316

uncharacterized LOC8066434

uncharacterized LOC8064791

uncharacterized LOC8065522

DCD (Development and Cell Death) domain protein

uncharacterized LOC106798439

DCD domain-containing protein NRP-A-like

otolith matrix protein OMM-64

uncharacterized LOC104648045

uncharacterized LOC101262857

uncharacterized LOC101252886

uncharacterized LOC103838723

uncharacterized LOC104881437

uncharacterized LOC100255660

uncharacterized LOC18094118

uncharacterized LOC18098866

uncharacterized LOC25488602

uncharacterized LOC25488603

uncharacterized LOC11434551

uncharacterized LOC107937150

uncharacterized LOC107931460

uncharacterized LOC107893159

uncharacterized LOC125592403

uncharacterized LOC106433779

uncharacterized LOC111197919

uncharacterized LOC102592789

uncharacterized LOC102605831

uncharacterized LOC102608495

uncharacterized LOC102611357

uncharacterized LOC102620019

uncharacterized LOC107799715

uncharacterized LOC107777053

uncharacterized LOC107761629

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03083	Polycomb repressive complex	2
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2
hvu04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03430	Mismatch repair	2
osa03460	Fanconi anemia pathway	2
osa03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2
zma03082	ATP-dependent chromatin remodeling	2
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5
sbi03015	mRNA surveillance pathway	2
sbi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma00240	Pyrimidine metabolism	2
gma00670	One carbon pool by folate	2
gma00790	Folate biosynthesis	2
gma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3
bra04141	Protein processing in endoplasmic reticulum	3
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	4
ppo00510	N-Glycan biosynthesis	2
ppo00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	2
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04626	Plant-pathogen interaction	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	2
ghi03420	Nucleotide excision repair	2
ghi03430	Mismatch repair	2
ghi03440	Homologous recombination	2
ghi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	2
ghi03420	Nucleotide excision repair	2
ghi03430	Mismatch repair	2
ghi03440	Homologous recombination	2
ghi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	6
bna03013	Nucleocytoplasmic transport	4
bna00561	Glycerolipid metabolism	2
bna00564	Glycerophospholipid metabolism	2
bna00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	6
bna00561	Glycerolipid metabolism	2
bna00564	Glycerophospholipid metabolism	2
bna00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	6
bna03013	Nucleocytoplasmic transport	4
bna00561	Glycerolipid metabolism	2
bna00564	Glycerophospholipid metabolism	2
bna00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03440	Homologous recombination	2
cit03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00510	N-Glycan biosynthesis	2
nta00513	Various types of N-glycan biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5
nta03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

100822149

100834009

123163959

123114029

123145494

123413371

123453072

123453084

4340554

4330717

4350618

103627723

100502502

100276316

8066434

8064791

8065522

817853

106798439

100804883

100779568

104648045

101262857

101252886

103838723

104881437

100255660

18094118

18098866

25488602

25488603

11434551

107937150

107931460

107893159

125592403

106433779

111197919

102592789

102605831

102608495

102611357

102620019

107799715

107777053

107761629

The preparation time of this page was 0.1 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	3	3	3	3	1	3	3	1	2	2	3	3	3	2	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100822149 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100822149 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**