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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100825301   transcription factor HY5 
 bdi-r.1   100836913   transcription factor HY5 
 bdi-r.1   100839215   transcription factor HY5 
 tae-r.2   123069101   transcription factor HY5 
 tae-r.2   123144357   transcription factor HY5 
 tae-r.2   123077618   transcription factor HY5 
 hvu-r.1   123443046   transcription factor HY5-like 
 hvu-r.1   123413561   transcription factor HY5 
 hvu-r.1   123402759   transcription factor HY5-like 
 osa-u.5   4328662   transcription factor HY5 
 osa-u.5   4327123   transcription factor HY5 
 zma-u.5   100286123   uncharacterized LOC100286123 
 zma-u.5   103634871   transcription factor HY5 
 zma-u.5   103638645   transcription factor HY5 
 sbi-r.1   8078473   transcription factor HY5 
 sbi-r.1   8082252   transcription factor HY5 
 sbi-r.1   8082929   transcription factor HY5 
 ath-u.5   HYH   HY5-homolog 
 ath-u.5   HY5   Basic-leucine zipper (bZIP) transcription factor family protein 
 gma-u.5   STF2   transcription factor STF2 
 gma-u.5   BZIP36   bZIP transcription factor bZIP36 
 gma-u.5   BZIP69   bZIP transcription factor bZIP69 
 sly-u.5   HY5   THY5 protein 
 bra-r.6   103839184   transcription factor HY5-like 
 bra-r.6   103850763   transcription factor HY5 
 bra-r.6   HY5   transcription factor HY5 
 vvi-u.5   100261472   transcription factor HY5-like 
 vvi-u.5   104879018   transcription factor HY5 
 ppo-u.5   7459020   transcription factor HY5 
 ppo-u.5   7471583   transcription factor HY5 
 ppo-u.5   7477210   transcription factor HY5-like 
 mtr-u.5   25490432   cellulose synthase A catalytic subunit 1 [UDP-forming] 
 mtr-u.5   11420561   transcription factor HY5-like 
 ghi-r.1   121219986   transcription factor HY5 
 ghi-r.1   107909196   transcription factor HY5 
 bna-r.1   106385812   transcription factor HY5-like 
 bna-r.1   125581422   transcription factor HY5-like 
 bna-r.1   106345289   transcription factor HY5-like 
 sot-r.1   102588526   transcription factor HY5 
 nta-r.1   107776843   transcription factor HY5 
 nta-r.1   142179585   transcription factor HY5-like 
 cre-r.1   CHLRE_06g310500v5   uncharacterized protein 

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Top 50 coexpressed genes to 100825301 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100825301 (bdi-r.1 coexpression data)

CoexMap"100825301"


bdiLOC100825301 | Entrez gene ID : 100825301      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot nta cre cit
Paralog 3 3 3 2 3 3 2 3 1 3 2 3 2 2 3 1 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi04712 [list] [network] Circadian rhythm - plant (44 genes)
GO BP
GO:0010218 [list] [network] response to far red light  (3 genes)  IEA  
GO:0010017 [list] [network] red or far-red light signaling pathway  (6 genes)  IEA  
GO:0010099 [list] [network] regulation of photomorphogenesis  (6 genes)  IEA  
GO:0010114 [list] [network] response to red light  (12 genes)  IEA  
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (120 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2880 genes)  IEA  
GO MF
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (256 genes)  IEA  
Protein XP_003569436.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_003569436.1)
Subcellular
localization
TargetP
chlo 8,  other 3  (predict for XP_003569436.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100825301
bdi-r.1
for
100836913
bdi-r.1
for
100839215
tae-r.2
for
123069101
tae-r.2
for
123144357
tae-r.2
for
123077618
hvu-r.1
for
123443046
hvu-r.1
for
123413561
hvu-r.1
for
123402759
osa-u.5
for
4328662
osa-u.5
for
4327123
zma-u.5
for
100286123
zma-u.5
for
103634871
zma-u.5
for
103638645
sbi-r.1
for
8078473
sbi-r.1
for
8082252
sbi-r.1
for
8082929
ath-u.5
for
HYH
ath-u.5
for
HY5
gma-u.5
for
STF2
gma-u.5
for
BZIP36
gma-u.5
for
BZIP69
sly-u.5
for
HY5
bra-r.6
for
103839184
bra-r.6
for
103850763
bra-r.6
for
HY5
vvi-u.5
for
100261472
vvi-u.5
for
104879018
ppo-u.5
for
7459020
ppo-u.5
for
7471583
ppo-u.5
for
7477210
mtr-u.5
for
25490432
mtr-u.5
for
11420561
ghi-r.1
for
121219986
ghi-r.1
for
107909196
bna-r.1
for
106385812
bna-r.1
for
125581422
bna-r.1
for
106345289
sot-r.1
for
102588526
nta-r.1
for
107776843
nta-r.1
for
142179585
cre-r.1
for
CHLRE_06g310500v5


Ortholog ID: 2407
Species bdi bdi bdi tae hvu hvu hvu osa osa zma zma zma sbi sbi sbi ath ath gma gma gma sly bra bra bra vvi vvi ppo ppo ppo mtr mtr ghi ghi bna bna bna sot nta nta cre
Symbol LOC100825301 LOC100836913 LOC100839215 LOC123060540 LOC123443046 LOC123413561 LOC123402759 LOC4328662 LOC4327123 LOC100286123 LOC103634871 LOC103638645 LOC8078473 LOC8082252 LOC8082929 HYH HY5 BZIP36 BZIP69 LOC100783826 HY5 LOC103850763 HY5 LOC103859717 LOC100261472 LOC104879018 LOC7459020 LOC7471583 LOC7477210 LOC25490432 LOC11420561 LOC121219986 LOC107909196 LOC106372421 LOC106391328 LOC125609007 LOC102588526 LOC107776843 LOC142179585 CHLRE_06g310500v5
Function* transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5-like transcription factor HY5 transcription factor HY5-like transcription factor HY5 transcription factor HY5 uncharacterized LOC100286123 transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5 HY5-homolog Basic-leucine zipper (bZIP) transcription factor family protein bZIP transcription factor bZIP36 bZIP transcription factor bZIP69 transcription factor HY5-like THY5 protein transcription factor HY5 transcription factor HY5 transcription factor HY5-like transcription factor HY5-like transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5-like cellulose synthase A catalytic subunit 1 [UDP-forming] transcription factor HY5-like transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5-like transcription factor HY5 transcription factor HY5 transcription factor HY5-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 4
bdi04142 Lysosome 4
bdi04145 Phagosome 4
bdi04075 Plant hormone signal transduction 2
bdi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00941 Flavonoid biosynthesis 4
bdi04712 Circadian rhythm - plant 2
bdi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00010 Glycolysis / Gluconeogenesis 2
bdi01200 Carbon metabolism 2
bdi01230 Biosynthesis of amino acids 2
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00941 Flavonoid biosynthesis 4
hvu04712 Circadian rhythm - plant 3
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 4
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 4
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 5
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath04712 Circadian rhythm - plant 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00230 Purine metabolism 2
gma00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 2
mtr00500 Starch and sucrose metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
mtr00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 8
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot04712 Circadian rhythm - plant 2
sot00940 Phenylpropanoid biosynthesis 2
sot00941 Flavonoid biosynthesis 2
sot00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100825301 100836913 100839215 123060540 123443046 123413561 123402759 4328662 4327123 100286123 103634871 103638645 8078473 8082252 8082929 821027 830996 548004 778143 100783826 543733 103850763 103846737 103859717 100261472 104879018 7459020 7471583 7477210 25490432 11420561 121219986 107909196 106372421 106391328 125609007 102588526 107776843 142179585 5716798
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