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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100825324   mediator of RNA polymerase II transcription subunit 15a 
 tae-r.2   123042372   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 tae-r.2   123118249   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 tae-r.2   123180830   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 hvu-r.1   123428286   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 osa-u.5   4348528   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 zma-u.5   103654689   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 sbi-r.1   8067871   uncharacterized LOC8067871 
 ath-u.5   AT1G72390   nuclear receptor coactivator 
 gma-u.5   100814582   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 gma-u.5   100810803   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 sly-u.5   101257868   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 bra-r.6   103852779   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 bra-r.6   103831748   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 vvi-u.5   100265246   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 ppo-u.5   18094701   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 ppo-u.5   7475675   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 mtr-u.5   25502289   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 mtr-u.5   11434056   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 mtr-u.5   11427487   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 ghi-r.1   107906063   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 ghi-r.1   107961835   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 ghi-r.1   107958373   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 bna-r.1   106368323   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING-like 
 bna-r.1   106433048   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING-like 
 bna-r.1   106354212   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 sot-r.1   102598206   mediator of RNA polymerase II transcription subunit 15a 
 cit-r.1   102613498   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING 
 nta-r.1   107828181   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING-like 
 nta-r.1   107806008   protein PHYTOCHROME-DEPENDENT LATE-FLOWERING-like 

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Top 50 coexpressed genes to 100825324 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100825324 (bdi-r.1 coexpression data)

CoexMap"100825324"


bdiLOC100825324 | Entrez gene ID : 100825324      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 1 1 1 2 1 2 1 2 3 3 3 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (365 genes)  IEA  
GO CC
GO:0000124 [list] [network] SAGA complex  (18 genes)  IEA  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (110 genes)  IEA  
Protein XP_003573851.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1  (predict for XP_003573851.1)
Subcellular
localization
TargetP
mito 4  (predict for XP_003573851.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100825324
tae-r.2
for
123042372
tae-r.2
for
123118249
tae-r.2
for
123180830
hvu-r.1
for
123428286
osa-u.5
for
4348528
zma-u.5
for
103654689
sbi-r.1
for
8067871
ath-u.5
for
AT1G72390
gma-u.5
for
100814582
gma-u.5
for
100810803
sly-u.5
for
101257868
bra-r.6
for
103852779
bra-r.6
for
103831748
vvi-u.5
for
100265246
ppo-u.5
for
18094701
ppo-u.5
for
7475675
mtr-u.5
for
25502289
mtr-u.5
for
11434056
mtr-u.5
for
11427487
ghi-r.1
for
107906063
ghi-r.1
for
107961835
ghi-r.1
for
107958373
bna-r.1
for
106368323
bna-r.1
for
106433048
bna-r.1
for
106354212
sot-r.1
for
102598206
cit-r.1
for
102613498
nta-r.1
for
107828181
nta-r.1
for
107806008


Ortholog ID: 7093
Species bdi tae tae tae hvu osa zma sbi ath gma gma sly bra bra vvi ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna sot cit nta nta
Symbol LOC100825324 LOC123042372 LOC123118249 LOC123180830 LOC123428286 LOC4348528 LOC103654689 LOC8067871 AT1G72390 LOC100814582 LOC100810803 LOC101257868 LOC103852779 LOC103831748 LOC100265246 LOC18094701 LOC7475675 LOC25502289 LOC11434056 LOC11427487 LOC107906063 LOC107958373 LOC107900599 LOC106368323 LOC106433048 LOC106354212 LOC102598206 LOC102613498 LOC107828181 LOC107806008
Function* mediator of RNA polymerase II transcription subunit 15a protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING uncharacterized LOC8067871 nuclear receptor coactivator protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING-like protein PHYTOCHROME-DEPENDENT LATE-FLOWERING-like protein PHYTOCHROME-DEPENDENT LATE-FLOWERING mediator of RNA polymerase II transcription subunit 15a protein PHYTOCHROME-DEPENDENT LATE-FLOWERING protein PHYTOCHROME-DEPENDENT LATE-FLOWERING-like protein PHYTOCHROME-DEPENDENT LATE-FLOWERING-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04148 Efferocytosis 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03250 Viral life cycle - HIV-1 2
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03060 Protein export 2
ghi03013 Nucleocytoplasmic transport 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03060 Protein export 2
ghi03013 Nucleocytoplasmic transport 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100825324 123042372 123118249 123180830 123428286 4348528 103654689 8067871 843571 100814582 100810803 101257868 103852779 103831748 100265246 18094701 7475675 25502289 11434056 11427487 107906063 107958373 107900599 106368323 106433048 106354212 102598206 102613498 107828181 107806008
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