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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100827101   nuclear poly(A) polymerase 3 
 bdi-r.1   100845437   nuclear poly(A) polymerase 3 
 tae-r.2   123043606   nuclear poly(A) polymerase 3 
 tae-r.2   123051475   nuclear poly(A) polymerase 3 
 tae-r.2   123085688   nuclear poly(A) polymerase 3 
 hvu-r.1   123424651   nuclear poly(A) polymerase 3-like 
 hvu-r.1   123448802   nuclear poly(A) polymerase 3-like 
 osa-u.5   4344356   nuclear poly(A) polymerase 3 
 osa-u.5   9272301   nuclear poly(A) polymerase 3 
 zma-u.5   103639211   nuclear poly(A) polymerase 3 
 zma-u.5   100285931   Nuclear poly(A) polymerase 3 
 zma-u.5   100274408   Nuclear poly(A) polymerase 3 
 sbi-r.1   8081062   nuclear poly(A) polymerase 3 
 ath-u.5   AT5G02670   uncharacterized protein 
 sly-u.5   101244314   nuclear poly(A) polymerase 3 
 sly-u.5   101243972   nuclear poly(A) polymerase 3 
 bra-r.6   103870736   nuclear poly(A) polymerase 3 
 vvi-u.5   100267147   nuclear poly(A) polymerase 3 
 ppo-u.5   7485885   nuclear poly(A) polymerase 3 
 ghi-r.1   107910565   nuclear poly(A) polymerase 3 
 ghi-r.1   121215492   nuclear poly(A) polymerase 3 
 sot-r.1   102595923   nuclear poly(A) polymerase 3-like 
 sot-r.1   102598065   nuclear poly(A) polymerase 3-like 
 cit-r.1   102610335   nuclear poly(A) polymerase 3 
 nta-r.1   107796122   nuclear poly(A) polymerase 3 
 nta-r.1   107792249   nuclear poly(A) polymerase 3-like 

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Top 50 coexpressed genes to 100827101 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100827101 (bdi-r.1 coexpression data)

CoexMap"100827101"


bdiLOC100827101 | Entrez gene ID : 100827101      
Species bdi tae hvu osa zma sbi ath sly bra vvi ppo ghi sot cit nta gma cre mtr bna
Paralog 2 3 2 2 3 1 1 2 1 1 1 2 2 1 2 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi03015 [list] [network] mRNA surveillance pathway (130 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (2880 genes)  IEA  
GO MF
GO:1990817 [list] [network] poly(A) RNA polymerase activity  (8 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1239 genes)  IEA  
Protein XP_003558059.1 [sequence] [blastp]
XP_014753353.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_pero 2,  cyto_E.R. 2  (predict for XP_003558059.1)
cyto 6,  nucl 2,  chlo 1,  nucl_plas 1  (predict for XP_014753353.1)
Subcellular
localization
TargetP
chlo 4,  other 3  (predict for XP_003558059.1)
chlo 4,  other 3  (predict for XP_014753353.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100827101
bdi-r.1
for
100845437
tae-r.2
for
123043606
tae-r.2
for
123051475
tae-r.2
for
123085688
hvu-r.1
for
123424651
hvu-r.1
for
123448802
osa-u.5
for
4344356
osa-u.5
for
9272301
zma-u.5
for
103639211
zma-u.5
for
100285931
zma-u.5
for
100274408
sbi-r.1
for
8081062
ath-u.5
for
AT5G02670
sly-u.5
for
101244314
sly-u.5
for
101243972
bra-r.6
for
103870736
vvi-u.5
for
100267147
ppo-u.5
for
7485885
ghi-r.1
for
107910565
ghi-r.1
for
121215492
sot-r.1
for
102595923
sot-r.1
for
102598065
cit-r.1
for
102610335
nta-r.1
for
107796122
nta-r.1
for
107792249


Ortholog ID: 6541
Species bdi bdi tae tae tae hvu hvu osa osa zma zma zma sbi ath sly sly bra vvi ppo ghi ghi sot sot cit nta nta
Symbol LOC100827101 LOC100845437 LOC123043606 LOC123092317 LOC123097654 LOC123424651 LOC123448802 LOC4344356 LOC9272301 LOC103639211 LOC100285931 LOC100274408 LOC8081062 AT5G02670 LOC101244314 LOC101243972 LOC103870736 LOC100267147 LOC7485885 LOC107910565 LOC121215492 LOC102595923 LOC102598065 LOC102610335 LOC107796122 LOC107792249
Function* nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3-like nuclear poly(A) polymerase 3-like nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 Nuclear poly(A) polymerase 3 Nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 uncharacterized protein nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3-like nuclear poly(A) polymerase 3-like nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3 nuclear poly(A) polymerase 3-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00740 Riboflavin metabolism 2
bdi00790 Folate biosynthesis 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 6
tae03015 mRNA surveillance pathway 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 4
tae04075 Plant hormone signal transduction 3
tae03015 mRNA surveillance pathway 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi00561 Glycerolipid metabolism 2
sbi03250 Viral life cycle - HIV-1 2
sbi03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bra00350 Tyrosine metabolism 2
bra00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 7
ghi03013 Nucleocytoplasmic transport 5
ghi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 3
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00941 Flavonoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit01200 Carbon metabolism 2
cit01230 Biosynthesis of amino acids 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 4
nta03015 mRNA surveillance pathway 2
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 4
nta03015 mRNA surveillance pathway 2
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00910 Nitrogen metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100827101 100845437 123043606 123092317 123097654 123424651 123448802 4344356 9272301 103639211 100285931 100274408 8081062 831844 101244314 101243972 103870736 100267147 7485885 107910565 121215492 102595923 102598065 102610335 107796122 107792249
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