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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100825713   polyphenol oxidase I, chloroplastic 
 tae-r.2   123042120   polyphenol oxidase I, chloroplastic 
 tae-r.2   123191900   polyphenol oxidase I, chloroplastic 
 hvu-r.1   123430780   polyphenol oxidase I, chloroplastic-like 
 osa-u.5   4337055   polyphenol oxidase I, chloroplastic 
 zma-u.5   100283178   polyphenol oxidase II 
 zma-u.5   103641967   polyphenol oxidase, chloroplastic 
 zma-u.5   103651121   polyphenol oxidase, chloroplastic 
 sbi-r.1   8057594   polyphenol oxidase I, chloroplastic 
 sbi-r.1   8054733   polyphenol oxidase, chloroplastic 
 sbi-r.1   8056609   polyphenol oxidase I, chloroplastic 
 gma-u.5   100802763   polyphenol oxidase, chloroplastic 
 gma-u.5   100798709   polyphenol oxidase A1, chloroplastic 
 gma-u.5   100803171   polyphenol oxidase A1, chloroplastic 
 sly-u.5   101261257   polyphenol oxidase E, chloroplastic-like 
 sly-u.5   101263372   polyphenol oxidase, chloroplastic-like 
 vvi-u.5   100266870   polyphenol oxidase, chloroplastic 
 vvi-u.5   100256583   polyphenol oxidase, chloroplastic 
 vvi-u.5   PPO   polyphenol oxidase 
 ppo-u.5   112325657   polyphenol oxidase, chloroplastic 
 ppo-u.5   112324931   polyphenol oxidase, chloroplastic 
 ppo-u.5   18095460   polyphenol oxidase, chloroplastic 
 mtr-u.5   11425155   polyphenol oxidase A1, chloroplastic 
 mtr-u.5   11430769   polyphenol oxidase A1, chloroplastic 
 ghi-r.1   107923401   polyphenol oxidase, chloroplastic-like 
 ghi-r.1   121230900   polyphenol oxidase, chloroplastic 
 ghi-r.1   107960202   polyphenol oxidase, chloroplastic-like 
 sot-r.1   102605738   polyphenol oxidase, chloroplastic-like 
 cit-r.1   102625572   polyphenol oxidase, chloroplastic-like 
 nta-r.1   107767076   polyphenol oxidase, chloroplastic-like 

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Top 50 coexpressed genes to 100825713 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100825713 (bdi-r.1 coexpression data)

CoexMap"100830475"


bdiLOC100830475 | Entrez gene ID : 100830475      
Species bdi tae hvu osa zma sbi gma sly vvi ppo mtr ghi sot cit nta bna cre bra ath
Paralog 1 2 1 1 3 3 3 2 3 3 2 3 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi00350 [list] [network] Tyrosine metabolism (50 genes)
bdi00950 [list] [network] Isoquinoline alkaloid biosynthesis (26 genes)
GO BP
GO:0046148 [list] [network] pigment biosynthetic process  (43 genes)  IEA  
GO CC
GO MF
GO:0004097 [list] [network] catechol oxidase activity  (6 genes)  IEA  
Protein XP_010227274.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 2  (predict for XP_010227274.2)
Subcellular
localization
TargetP
chlo 5,  mito 4  (predict for XP_010227274.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100825713
tae-r.2
for
123042120
tae-r.2
for
123191900
hvu-r.1
for
123430780
osa-u.5
for
4337055
zma-u.5
for
100283178
zma-u.5
for
103641967
zma-u.5
for
103651121
sbi-r.1
for
8057594
sbi-r.1
for
8054733
sbi-r.1
for
8056609
gma-u.5
for
100802763
gma-u.5
for
100798709
gma-u.5
for
100803171
sly-u.5
for
101261257
sly-u.5
for
101263372
vvi-u.5
for
100266870
vvi-u.5
for
100256583
vvi-u.5
for
PPO
ppo-u.5
for
112325657
ppo-u.5
for
112324931
ppo-u.5
for
18095460
mtr-u.5
for
11425155
mtr-u.5
for
11430769
ghi-r.1
for
107923401
ghi-r.1
for
121230900
ghi-r.1
for
107960202
sot-r.1
for
102605738
cit-r.1
for
102625572
nta-r.1
for
107767076


Ortholog ID: 2686
Species bdi tae tae tae hvu osa zma zma zma sbi sbi sbi gma gma gma sly sly vvi vvi vvi ppo ppo ppo mtr mtr ghi ghi ghi sot cit nta
Symbol LOC100825713 LOC123042120 LOC123050074 LOC123042123 LOC123430780 LOC4337055 LOC100283178 LOC103641967 LOC103651121 LOC8057594 LOC8054733 LOC8056609 LOC100802763 LOC100803171 LOC100801048 LOC101261257 LOC101263372 LOC100266870 LOC100256583 PPO LOC112325657 LOC112324931 LOC7485450 LOC11430769 LOC11446900 LOC121230900 LOC107940403 LOC107891789 LOC102605738 LOC102625572 LOC107767076
Function* polyphenol oxidase I, chloroplastic polyphenol oxidase I, chloroplastic polyphenol oxidase, chloroplastic polyphenol oxidase, chloroplastic polyphenol oxidase I, chloroplastic-like polyphenol oxidase I, chloroplastic polyphenol oxidase II polyphenol oxidase, chloroplastic polyphenol oxidase, chloroplastic polyphenol oxidase I, chloroplastic polyphenol oxidase, chloroplastic polyphenol oxidase I, chloroplastic polyphenol oxidase, chloroplastic polyphenol oxidase A1, chloroplastic polyphenol oxidase, chloroplastic polyphenol oxidase E, chloroplastic-like polyphenol oxidase, chloroplastic-like polyphenol oxidase, chloroplastic polyphenol oxidase, chloroplastic polyphenol oxidase polyphenol oxidase, chloroplastic polyphenol oxidase, chloroplastic polyphenol oxidase, chloroplastic polyphenol oxidase A1, chloroplastic polyphenol oxidase A1, chloroplastic polyphenol oxidase, chloroplastic polyphenol oxidase, chloroplastic polyphenol oxidase, chloroplastic-like polyphenol oxidase, chloroplastic-like polyphenol oxidase, chloroplastic-like polyphenol oxidase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00350 Tyrosine metabolism 6
tae00950 Isoquinoline alkaloid biosynthesis 6
tae04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00350 Tyrosine metabolism 5
tae00950 Isoquinoline alkaloid biosynthesis 5
tae00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00350 Tyrosine metabolism 6
tae00950 Isoquinoline alkaloid biosynthesis 6
tae00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00040 Pentose and glucuronate interconversions 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00941 Flavonoid biosynthesis 4
sbi00350 Tyrosine metabolism 2
sbi00950 Isoquinoline alkaloid biosynthesis 2
sbi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00460 Cyanoamino acid metabolism 3
sbi00500 Starch and sucrose metabolism 3
sbi00999 Biosynthesis of various plant secondary metabolites 3
sbi00350 Tyrosine metabolism 2
sbi00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00350 Tyrosine metabolism 4
gma00950 Isoquinoline alkaloid biosynthesis 4
gma00052 Galactose metabolism 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
sly04075 Plant hormone signal transduction 2
sly04626 Plant-pathogen interaction 2
sly00350 Tyrosine metabolism 2
sly00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00350 Tyrosine metabolism 2
vvi00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04146 Peroxisome 2
vvi00350 Tyrosine metabolism 2
vvi00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00350 Tyrosine metabolism 6
ppo00950 Isoquinoline alkaloid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00350 Tyrosine metabolism 6
ppo00950 Isoquinoline alkaloid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00350 Tyrosine metabolism 3
mtr00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00350 Tyrosine metabolism 3
mtr00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 3
ghi00350 Tyrosine metabolism 2
ghi00950 Isoquinoline alkaloid biosynthesis 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00350 Tyrosine metabolism 4
ghi00950 Isoquinoline alkaloid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00350 Tyrosine metabolism 2
ghi00950 Isoquinoline alkaloid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100825713 123042120 123050074 123042123 123430780 4337055 100283178 103641967 103651121 8057594 8054733 8056609 100802763 100803171 100801048 101261257 101263372 100266870 100256583 100233086 112325657 112324931 7485450 11430769 11446900 121230900 107940403 107891789 102605738 102625572 107767076
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