ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100831760	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
bdi-r.1	100837610	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
tae-r.2	123127840	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic
tae-r.2	123087377	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
tae-r.2	123090555	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
hvu-r.1	123396437	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like
hvu-r.1	123401068	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic
osa-u.5	107277102	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic-like
osa-u.5	4352791	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like
zma-u.5	100284931	uncharacterized LOC100284931
sbi-r.1	8071470	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
sbi-r.1	8071468	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
ath-u.5	APG1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
gma-u.5	100806615	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
gma-u.5	100788766	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
gma-u.5	100783986	37 kDa inner envelope membrane protein, chloroplastic-like
sly-u.5	101267644	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
sly-u.5	101255662	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
bra-r.6	103830388	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
vvi-u.5	100240861	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
vvi-u.5	100266496	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
ppo-u.5	7480667	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
ppo-u.5	7476869	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
ppo-u.5	7473437	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
mtr-u.5	11429739	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
mtr-u.5	25484476	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
ghi-r.1	107927797	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
ghi-r.1	107941613	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
ghi-r.1	107924562	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
bna-r.1	106410579	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
bna-r.1	106353332	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
sot-r.1	102592709	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like
sot-r.1	102604412	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like
cit-r.1	102614553	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
cit-r.1	102630396	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like
nta-r.1	107773365	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like
nta-r.1	107793127	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
nta-r.1	107814278	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
cre-r.1	CHLRE_14g625450v5	uncharacterized protein

Top 50 coexpressed genes to 100831760 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100831760 (bdi-r.1 coexpression data)

CoexMap"100831760"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (48 genes)

bdi01240 [list] [network] Biosynthesis of cofactors (240 genes)

GO BP

GO:0032259 [list] [network] methylation

(126 genes)

IEA

GO CC

GO MF

GO:0051741 [list] [network] 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity

(2 genes)

IEA

Protein

XP_003575371.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, cyto_nucl 4, nucl 2, chlo 1, mito 1, plas 1, chlo_mito 1, mito_plas 1

(predict for XP_003575371.1)

Subcellular
localization
TargetP

scret 5, other 5

(predict for XP_003575371.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100831760	bdi-r.1 for 100837610	tae-r.2 for 123127840	tae-r.2 for 123087377	tae-r.2 for 123090555	hvu-r.1 for 123396437	hvu-r.1 for 123401068	osa-u.5 for 107277102	osa-u.5 for 4352791	zma-u.5 for 100284931	sbi-r.1 for 8071470	sbi-r.1 for 8071468	ath-u.5 for APG1	gma-u.5 for 100806615	gma-u.5 for 100788766	gma-u.5 for 100783986	sly-u.5 for 101267644	sly-u.5 for 101255662	bra-r.6 for 103830388	vvi-u.5 for 100240861	vvi-u.5 for 100266496	ppo-u.5 for 7480667	ppo-u.5 for 7476869	ppo-u.5 for 7473437	mtr-u.5 for 11429739	mtr-u.5 for 25484476	ghi-r.1 for 107927797	ghi-r.1 for 107941613	ghi-r.1 for 107924562	bna-r.1 for 106410579	bna-r.1 for 106353332	sot-r.1 for 102592709	sot-r.1 for 102604412	cit-r.1 for 102614553	cit-r.1 for 102630396	nta-r.1 for 107773365	nta-r.1 for 107793127	nta-r.1 for 107814278	cre-r.1 for CHLRE_14g625450v5

Ortholog

Ortholog ID: 3243

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

APG1

Function^*

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic-like

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like

uncharacterized LOC100284931

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic

37 kDa inner envelope membrane protein, chloroplastic-like

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like

2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00250	Alanine, aspartate and glutamate metabolism	4
bdi00410	beta-Alanine metabolism	4
bdi00430	Taurine and hypotaurine metabolism	4
bdi00650	Butanoate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	3
bdi01230	Biosynthesis of amino acids	3
bdi00190	Oxidative phosphorylation	2
bdi00195	Photosynthesis	2
bdi00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	5
tae00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
tae00460	Cyanoamino acid metabolism	2
tae00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	4
tae00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	4
tae00053	Ascorbate and aldarate metabolism	3
tae00130	Ubiquinone and other terpenoid-quinone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2
hvu04145	Phagosome	2
hvu04517	IgSF CAM signaling	2
hvu04814	Motor proteins	2
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01240	Biosynthesis of cofactors	2
osa00910	Nitrogen metabolism	2
osa01310	Nitrogen cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	6
osa00710	Carbon fixation by Calvin cycle	5
osa01230	Biosynthesis of amino acids	5
osa03010	Ribosome	4
osa00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	8
zma00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
zma01240	Biosynthesis of cofactors	2
zma00061	Fatty acid biosynthesis	2
zma01040	Biosynthesis of unsaturated fatty acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4
sbi01240	Biosynthesis of cofactors	3
sbi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
sbi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	3
sbi00710	Carbon fixation by Calvin cycle	2
sbi01200	Carbon metabolism	2
sbi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
sbi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	5
ath01230	Biosynthesis of amino acids	5
ath00710	Carbon fixation by Calvin cycle	4
ath03010	Ribosome	4
ath00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01240	Biosynthesis of cofactors	5
gma00010	Glycolysis / Gluconeogenesis	4
gma01200	Carbon metabolism	4
gma00785	Lipoic acid metabolism	3
gma03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	6
gma01200	Carbon metabolism	6
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	5
gma00710	Carbon fixation by Calvin cycle	4
gma00620	Pyruvate metabolism	3
gma00010	Glycolysis / Gluconeogenesis	3
gma01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01240	Biosynthesis of cofactors	2
sly00010	Glycolysis / Gluconeogenesis	2
sly00620	Pyruvate metabolism	2
sly01200	Carbon metabolism	2
sly01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	6
sly00630	Glyoxylate and dicarboxylate metabolism	5
sly00260	Glycine, serine and threonine metabolism	3
sly00710	Carbon fixation by Calvin cycle	3
sly00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	5
bra00630	Glyoxylate and dicarboxylate metabolism	3
bra00785	Lipoic acid metabolism	3
bra01240	Biosynthesis of cofactors	2
bra00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00195	Photosynthesis	5
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	7
vvi00710	Carbon fixation by Calvin cycle	5
vvi01240	Biosynthesis of cofactors	3
vvi00260	Glycine, serine and threonine metabolism	2
vvi00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	6
ppo03010	Ribosome	3
ppo00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ppo00860	Porphyrin metabolism	2
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo01240	Biosynthesis of cofactors	3
ppo00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ppo00240	Pyrimidine metabolism	2
ppo01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	3
ppo00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr01200	Carbon metabolism	3
mtr00710	Carbon fixation by Calvin cycle	2
mtr01230	Biosynthesis of amino acids	2
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	3
mtr00630	Glyoxylate and dicarboxylate metabolism	2
mtr01200	Carbon metabolism	2
mtr04146	Peroxisome	2
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
ghi01240	Biosynthesis of cofactors	4
ghi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
ghi01240	Biosynthesis of cofactors	4
ghi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
ghi01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00710	Carbon fixation by Calvin cycle	3
sot01200	Carbon metabolism	3
sot01230	Biosynthesis of amino acids	3
sot00860	Porphyrin metabolism	2
sot00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	3
sot01230	Biosynthesis of amino acids	2
sot00061	Fatty acid biosynthesis	2
sot01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	10
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	6
nta01240	Biosynthesis of cofactors	4
nta00230	Purine metabolism	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	4
cre00130	Ubiquinone and other terpenoid-quinone biosynthesis	3

Expression

Expression pattern

Entrez Gene ID^*

100831760

100837610

123127840

123087377

123137605

123396437

123401068

123450973

107277102

4352791

100284931

8071470

8071468

825516

100806615

100788766

100783986

101267644

101255662

103830388

100240861

100266496

7480667

7476869

7473437

11429739

25484476

107924562

107924420

107915302

106410579

106353332

102592709

102604412

102614553

102630396

107773365

107814278

107760985

5718296

The preparation time of this page was 0.1 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	2	1	2	1	3	2	1	2	3	2	3	2	2	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100831760 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100831760 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**