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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100835769   peptide chain release factor APG3, chloroplastic 
 tae-r.2   123176461   peptide chain release factor APG3, chloroplastic 
 tae-r.2   123096887   peptide chain release factor APG3, chloroplastic 
 tae-r.2   123086193   peptide chain release factor APG3, chloroplastic 
 hvu-r.1   123448398   peptide chain release factor APG3, chloroplastic 
 osa-u.5   4351050   peptide chain release factor APG3, chloroplastic 
 zma-u.5   100279745   uncharacterized LOC100279745 
 sbi-r.1   8070177   peptide chain release factor APG3, chloroplastic 
 ath-u.5   APG3   Peptide chain release factor 1 
 gma-u.5   100805037   peptide chain release factor APG3, chloroplastic 
 gma-u.5   100777225   peptide chain release factor APG3, chloroplastic 
 sly-u.5   101256123   peptide chain release factor APG3, chloroplastic 
 bra-r.6   103862767   peptide chain release factor APG3, chloroplastic 
 bra-r.6   103842096   peptide chain release factor APG3, chloroplastic 
 vvi-u.5   100247720   peptide chain release factor APG3, chloroplastic 
 ppo-u.5   7457960   peptide chain release factor APG3, chloroplastic 
 mtr-u.5   11430689   peptide chain release factor APG3, chloroplastic 
 ghi-r.1   107947962   peptide chain release factor APG3, chloroplastic 
 ghi-r.1   121203152   peptide chain release factor APG3, chloroplastic 
 bna-r.1   106415278   peptide chain release factor APG3, chloroplastic 
 bna-r.1   106444883   peptide chain release factor APG3, chloroplastic-like 
 bna-r.1   106420483   peptide chain release factor APG3, chloroplastic-like 
 sot-r.1   102578153   peptide chain release factor APG3, chloroplastic 
 cit-r.1   102610080   peptide chain release factor APG3, chloroplastic 
 nta-r.1   107819874   peptide chain release factor APG3, chloroplastic 
 nta-r.1   107822849   peptide chain release factor APG3, chloroplastic 
 cre-r.1   CHLRE_16g673617v5   uncharacterized protein 

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Top 50 coexpressed genes to 100835769 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100835769 (bdi-r.1 coexpression data)

CoexMap"100835769"


bdiLOC100835769 | Entrez gene ID : 100835769      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 1 1 1 2 1 2 1 1 1 2 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032544 [list] [network] plastid translation  (5 genes)  IEA  
GO:0010027 [list] [network] thylakoid membrane organization  (15 genes)  IEA  
GO:0006415 [list] [network] translational termination  (17 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (73 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (552 genes)  IEA  
GO MF
GO:0016149 [list] [network] translation release factor activity, codon specific  (9 genes)  IEA  
Protein XP_003577275.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  mito 2,  cyto_mito 1  (predict for XP_003577275.1)
Subcellular
localization
TargetP
chlo 9,  mito 3  (predict for XP_003577275.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100835769
tae-r.2
for
123176461
tae-r.2
for
123096887
tae-r.2
for
123086193
hvu-r.1
for
123448398
osa-u.5
for
4351050
zma-u.5
for
100279745
sbi-r.1
for
8070177
ath-u.5
for
APG3
gma-u.5
for
100805037
gma-u.5
for
100777225
sly-u.5
for
101256123
bra-r.6
for
103862767
bra-r.6
for
103842096
vvi-u.5
for
100247720
ppo-u.5
for
7457960
mtr-u.5
for
11430689
ghi-r.1
for
107947962
ghi-r.1
for
121203152
bna-r.1
for
106415278
bna-r.1
for
106444883
bna-r.1
for
106420483
sot-r.1
for
102578153
cit-r.1
for
102610080
nta-r.1
for
107819874
nta-r.1
for
107822849
cre-r.1
for
CHLRE_16g673617v5


Ortholog ID: 8521
Species bdi tae tae tae hvu osa zma sbi ath gma gma sly bra bra vvi ppo mtr ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC100835769 LOC123176461 LOC123096887 LOC123086193 LOC123448398 LOC4351050 LOC100279745 LOC8070177 APG3 LOC100805037 LOC100777225 LOC101256123 LOC103862767 LOC103842096 LOC100247720 LOC7457960 LOC11430689 LOC107947962 LOC121203152 LOC106444883 LOC106420483 LOC106421383 LOC102578153 LOC102610080 LOC107819874 LOC107822849 CHLRE_16g673617v5
Function* peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic uncharacterized LOC100279745 peptide chain release factor APG3, chloroplastic Peptide chain release factor 1 peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic-like peptide chain release factor APG3, chloroplastic-like peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic peptide chain release factor APG3, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
bdi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 5
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 5
tae00906 Carotenoid biosynthesis 3
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma00740 Riboflavin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 3
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot03060 Protein export 2
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100835769 123176461 123096887 123086193 123448398 4351050 100279745 8070177 825466 100805037 100777225 101256123 103862767 103842096 100247720 7457960 11430689 107947962 121203152 106444883 106420483 106421383 102578153 102610080 107819874 107822849 5721375
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