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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100835825   cleavage and polyadenylation specificity factor subunit 2 
 bdi-r.1   100830470   cleavage and polyadenylation specificity factor subunit 2 
 tae-r.2   123113814   cleavage and polyadenylation specificity factor subunit 2 
 tae-r.2   123105511   cleavage and polyadenylation specificity factor subunit 2 
 tae-r.2   123123322   cleavage and polyadenylation specificity factor subunit 2 
 hvu-r.1   123452843   cleavage and polyadenylation specificity factor subunit 2 
 osa-u.5   4347905   cleavage and polyadenylation specificity factor subunit 2-like 
 zma-u.5   IDP798   Cleavage and polyadenylation specificity factor subunit 2 
 sbi-r.1   8079657   cleavage and polyadenylation specificity factor subunit 2 
 ath-u.5   CPSF100   cleavage and polyadenylation specificity factor 100 
 gma-u.5   100796817   cleavage and polyadenylation specificity factor subunit 2 
 gma-u.5   100777002   cleavage and polyadenylation specificity factor subunit 2 
 sly-u.5   101254167   cleavage and polyadenylation specificity factor subunit 2 
 bra-r.6   103874248   cleavage and polyadenylation specificity factor subunit 2 
 vvi-u.5   100267865   cleavage and polyadenylation specificity factor subunit 2 
 ppo-u.5   18095012   cleavage and polyadenylation specificity factor subunit 2 
 mtr-u.5   25483257   cleavage and polyadenylation specificity factor subunit 2 
 ghi-r.1   121211204   cleavage and polyadenylation specificity factor subunit 2 
 ghi-r.1   121224393   cleavage and polyadenylation specificity factor subunit 2 
 bna-r.1   106348299   cleavage and polyadenylation specificity factor subunit 2 
 bna-r.1   111198678   cleavage and polyadenylation specificity factor subunit 2 
 sot-r.1   102602403   cleavage and polyadenylation specificity factor subunit 2 
 cit-r.1   102616738   cleavage and polyadenylation specificity factor subunit 2 
 nta-r.1   107793580   cleavage and polyadenylation specificity factor subunit 2-like 
 nta-r.1   107766765   cleavage and polyadenylation specificity factor subunit 2 
 cre-r.1   CHLRE_12g487600v5   uncharacterized protein 

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Top 50 coexpressed genes to 100835825 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100835825 (bdi-r.1 coexpression data)

CoexMap"100835825"


bdiLOC100835825 | Entrez gene ID : 100835825    
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 3 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi03015 [list] [network] mRNA surveillance pathway (130 genes)
GO BP
GO:0006398 [list] [network] mRNA 3'-end processing by stem-loop binding and cleavage  (4 genes)  IEA  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (14 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1239 genes)  IEA  
Protein XP_003565596.1 [sequence] [blastp]
XP_010230345.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for XP_003565596.1)
cyto 6,  chlo 2,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for XP_010230345.1)
Subcellular
localization
TargetP
other 8  (predict for XP_003565596.1)
other 8  (predict for XP_010230345.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100835825
bdi-r.1
for
100830470
tae-r.2
for
123113814
tae-r.2
for
123105511
tae-r.2
for
123123322
hvu-r.1
for
123452843
osa-u.5
for
4347905
zma-u.5
for
IDP798
sbi-r.1
for
8079657
ath-u.5
for
CPSF100
gma-u.5
for
100796817
gma-u.5
for
100777002
sly-u.5
for
101254167
bra-r.6
for
103874248
vvi-u.5
for
100267865
ppo-u.5
for
18095012
mtr-u.5
for
25483257
ghi-r.1
for
121211204
ghi-r.1
for
121224393
bna-r.1
for
106348299
bna-r.1
for
111198678
sot-r.1
for
102602403
cit-r.1
for
102616738
nta-r.1
for
107793580
nta-r.1
for
107766765
cre-r.1
for
CHLRE_12g487600v5


Ortholog ID: 9689
Species bdi bdi tae tae tae hvu osa zma sbi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC100835825 LOC100830470 LOC123113814 LOC123105511 LOC123123322 LOC123452843 LOC4347905 IDP798 LOC8079657 CPSF100 LOC100796817 LOC100777002 LOC101254167 LOC103874248 LOC100267865 LOC18095012 LOC25483257 LOC121211204 LOC121224393 LOC106348299 LOC111198678 LOC102602403 LOC102616738 LOC107793580 LOC107766765 CHLRE_12g487600v5
Function* cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2-like Cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor 100 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2-like cleavage and polyadenylation specificity factor subunit 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 5
bdi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 6
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 8
tae00970 Aminoacyl-tRNA biosynthesis 4
tae03013 Nucleocytoplasmic transport 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae00970 Aminoacyl-tRNA biosynthesis 4
tae00270 Cysteine and methionine metabolism 3
tae00920 Sulfur metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03008 Ribosome biogenesis in eukaryotes 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
sbi03018 RNA degradation 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 6
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03040 Spliceosome 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 4
sly03015 mRNA surveillance pathway 3
sly03020 RNA polymerase 2
sly03018 RNA degradation 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 3
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00510 N-Glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 9
ghi00510 N-Glycan biosynthesis 8
ghi00513 Various types of N-glycan biosynthesis 6
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 9
ghi00510 N-Glycan biosynthesis 8
ghi00513 Various types of N-glycan biosynthesis 6
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna03015 mRNA surveillance pathway 2
bna00261 Monobactam biosynthesis 2
bna00300 Lysine biosynthesis 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna03015 mRNA surveillance pathway 2
bna00261 Monobactam biosynthesis 2
bna00300 Lysine biosynthesis 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
nta03015 mRNA surveillance pathway 2
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03410 Base excision repair 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cre01240 Biosynthesis of cofactors 2
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100835825 100830470 123113814 123105511 123123322 123452843 4347905 100285191 8079657 832453 100796817 100777002 101254167 103874248 100267865 18095012 25483257 121211204 121224393 106348299 111198678 102602403 102616738 107793580 107766765 5716649
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