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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100822305   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 
 tae-r.2   123122716   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 
 tae-r.2   123119285   9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic 
 tae-r.2   123113194   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 
 hvu-r.1   123395880   9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 
 hvu-r.1   123452108   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 
 osa-u.5   4342424   9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic 
 osa-u.5   4333566   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 
 osa-u.5   9270250   9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 
 zma-u.5   103648268   9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic 
 zma-u.5   100281391   uncharacterized LOC100281391 
 sbi-r.1   8062208   9-cis-epoxycarotenoid dioxygenase 1, chloroplastic 
 ath-u.5   NCED3   nine-cis-epoxycarotenoid dioxygenase 3 
 gma-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 gma-u.5   100780284   probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 
 gma-u.5   100814399   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 sly-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 sly-u.5   NCED1   9-cis-epoxycarotenoid dioxygenase 
 bra-r.6   103859576   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 
 bra-r.6   103840429   probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic 
 vvi-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 vvi-u.5   NCED1   9-cis-epoxycarotenoid dioxygenase 1 
 vvi-u.5   100244362   9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic 
 ppo-u.5   7472358   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 ppo-u.5   18095516   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 mtr-u.5   120577706   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 mtr-u.5   25487063   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 ghi-r.1   107912930   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 ghi-r.1   107905887   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 ghi-r.1   107901883   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 sot-r.1   102577733   9-cis-epoxy-carotenoid dioxygenase 2 
 sot-r.1   102577783   9-cis-epoxy-carotenoid dioxygenase 1 
 cit-r.1   NCED   putative 9-cis-epoxycarotenoid dioxygenase 3 
 cit-r.1   102578070   9-cis-epoxycarotenoid dioxygenase 2 
 nta-r.1   107814412   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like 
 nta-r.1   107799511   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like 

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Top 50 coexpressed genes to 100822305 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100822305 (bdi-r.1 coexpression data)

CoexMap"100836107"


bdiLOC100836107 | Entrez gene ID : 100836107      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi sot cit nta cre bna
Paralog 1 3 2 3 2 1 1 3 2 2 3 2 2 3 2 2 2 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi00906 [list] [network] Carotenoid biosynthesis (35 genes)
GO BP
GO:0016121 [list] [network] carotene catabolic process  (11 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (95 genes)  IEA  
GO MF
GO:0010436 [list] [network] carotenoid dioxygenase activity  (11 genes)  IEA  
Protein XP_003561467.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_003561467.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_003561467.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100822305
tae-r.2
for
123122716
tae-r.2
for
123119285
tae-r.2
for
123113194
hvu-r.1
for
123395880
hvu-r.1
for
123452108
osa-u.5
for
4342424
osa-u.5
for
4333566
osa-u.5
for
9270250
zma-u.5
for
103648268
zma-u.5
for
100281391
sbi-r.1
for
8062208
ath-u.5
for
NCED3
gma-u.5
for
NCED2
gma-u.5
for
100780284
gma-u.5
for
100814399
sly-u.5
for
NCED2
sly-u.5
for
NCED1
bra-r.6
for
103859576
bra-r.6
for
103840429
vvi-u.5
for
NCED2
vvi-u.5
for
NCED1
vvi-u.5
for
100244362
ppo-u.5
for
7472358
ppo-u.5
for
18095516
mtr-u.5
for
120577706
mtr-u.5
for
25487063
ghi-r.1
for
107912930
ghi-r.1
for
107905887
ghi-r.1
for
107901883
sot-r.1
for
102577733
sot-r.1
for
102577783
cit-r.1
for
NCED
cit-r.1
for
102578070
nta-r.1
for
107814412
nta-r.1
for
107799511


Ortholog ID: 987
Species bdi tae tae tae hvu hvu osa osa osa zma zma zma sbi ath gma gma gma sly sly bra bra vvi vvi vvi ppo mtr mtr ghi ghi ghi bna sot sot cit cit nta nta
Symbol LOC100822305 LOC123122716 LOC123110233 LOC123104904 LOC123395880 LOC123452108 LOC4342424 LOC4333566 LOC9270250 LOC103648268 LOC100281391 LOC100281136 LOC8062208 NCED3 NCED2 LOC100814399 LOC100777166 NCED2 NCED1 LOC103859576 LOC103870025 NCED2 NCED1 LOC100244362 LOC18095516 LOC120577706 LOC25487063 LOC107905887 LOC107914792 LOC107909170 LOC106423568 LOC102577733 LOC102577783 NCED LOC102578070 LOC107814412 LOC107822968
Function* 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic uncharacterized LOC100281391 uncharacterized LOC100281136 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic nine-cis-epoxycarotenoid dioxygenase 3 9-cis-epoxycarotenoid dioxygenase 2 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase 2 9-cis-epoxycarotenoid dioxygenase 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase 2 9-cis-epoxycarotenoid dioxygenase 1 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 9-cis-epoxy-carotenoid dioxygenase 2 9-cis-epoxy-carotenoid dioxygenase 1 putative 9-cis-epoxycarotenoid dioxygenase 3 9-cis-epoxycarotenoid dioxygenase 2 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 7
bdi04016 MAPK signaling pathway - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 9
tae04016 MAPK signaling pathway - plant 6
tae04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04016 MAPK signaling pathway - plant 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 7
osa04016 MAPK signaling pathway - plant 5
osa00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 5
zma04016 MAPK signaling pathway - plant 3
zma04075 Plant hormone signal transduction 3
zma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 6
zma04016 MAPK signaling pathway - plant 5
zma04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 8
zma04016 MAPK signaling pathway - plant 7
zma00906 Carotenoid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 3
sbi04075 Plant hormone signal transduction 3
sbi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 5
ath04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
gma00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 3
gma04075 Plant hormone signal transduction 3
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 4
sly00520 Amino sugar and nucleotide sugar metabolism 2
sly01250 Biosynthesis of nucleotide sugars 2
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 6
sly04016 MAPK signaling pathway - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 4
bra04075 Plant hormone signal transduction 4
bra00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 5
bra04075 Plant hormone signal transduction 5
bra00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 4
vvi04075 Plant hormone signal transduction 4
vvi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 5
vvi04075 Plant hormone signal transduction 5
vvi00906 Carotenoid biosynthesis 4
vvi00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00906 Carotenoid biosynthesis 3
ppo04016 MAPK signaling pathway - plant 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
mtr04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 6
ghi04075 Plant hormone signal transduction 6
ghi04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 6
ghi04075 Plant hormone signal transduction 6
ghi04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 5
ghi00908 Zeatin biosynthesis 4
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 5
sot04016 MAPK signaling pathway - plant 4
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 3
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 4
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 4
nta00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100822305 123122716 123110233 123104904 123395880 123452108 4342424 4333566 9270250 103648268 100281391 100281136 8062208 820667 100797882 100814399 100777166 100316877 544163 103859576 103870025 100232943 100232942 100244362 18095516 120577706 25487063 107905887 107914792 107909170 106423568 102577733 102577783 102578064 102578070 107814412 107822968
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