ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100837188	VIN3-like protein 2
bdi-r.1	100831969	VIN3-like protein 2
tae-r.2	123136328	VIN3-like protein 2
tae-r.2	123130070	VIN3-like protein 2
tae-r.2	123132281	VIN3-like protein 2
hvu-r.1	123403939	VIN3-like protein 2
osa-u.5	4328327	VIN3-like protein 2
osa-u.5	4344961	VIN3-like protein 2
zma-u.5	103652991	VIN3-like protein 2
zma-u.5	100502265	uncharacterized LOC100502265
zma-u.5	100274676	uncharacterized LOC100274676
sbi-r.1	8074646	VIN3-like protein 2
sbi-r.1	8085158	VIN3-like protein 2
ath-u.5	VEL1	vernalization5/VIN3-like protein
gma-u.5	100820128	VIN3-like protein 2
gma-u.5	100819331	VIN3-like protein 2
gma-u.5	100794721	VIN3-like protein 2
sly-u.5	101257068	VIN3-like protein 2
sly-u.5	VIN3	vernalization insensitive 3
bra-r.6	103861941	VIN3-like protein 2
bra-r.6	103834685	VIN3-like protein 2
bra-r.6	103852843	VIN3-like protein 2
vvi-u.5	100251391	VIN3-like protein 2
vvi-u.5	100266086	VIN3-like protein 2
ppo-u.5	7488961	VIN3-like protein 2
ppo-u.5	7467231	VIN3-like protein 2
ppo-u.5	18100497	VIN3-like protein 2
mtr-u.5	11433693	VIN3-like protein 2
mtr-u.5	11443783	VIN3-like protein 2
ghi-r.1	107958674	VIN3-like protein 2
ghi-r.1	107926269	VIN3-like protein 2
ghi-r.1	107919514	VIN3-like protein 2
bna-r.1	106361152	VIN3-like protein 2
bna-r.1	106390987	VIN3-like protein 2
bna-r.1	106358544	VIN3-like protein 2
sot-r.1	102603987	VIN3-like protein 2
sot-r.1	102605824	VIN3-like protein 2
sot-r.1	102598718	VIN3-like protein 2
cit-r.1	102611668	VIN3-like protein 2
cit-r.1	102615783	VIN3-like protein 2
nta-r.1	107783766	VIN3-like protein 2
nta-r.1	107824049	VIN3-like protein 2
nta-r.1	107803958	VIN3-like protein 2

Top 50 coexpressed genes to 100837188 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100837188 (bdi-r.1 coexpression data)

CoexMap"100837188"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0010048 [list] [network] vernalization response	(5 genes)	IEA
GO:0040029 [list] [network] epigenetic regulation of gene expression	(35 genes)	IEA

GO CC

GO MF

Protein

XP_003573553.1 [sequence] [blastp]
XP_024317690.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 2	(predict for XP_003573553.1)
nucl 7, cyto 2	(predict for XP_024317690.1)

Subcellular
localization
TargetP

other 8	(predict for XP_003573553.1)
other 8	(predict for XP_024317690.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100837188	bdi-r.1 for 100831969	tae-r.2 for 123136328	tae-r.2 for 123130070	tae-r.2 for 123132281	hvu-r.1 for 123403939	osa-u.5 for 4328327	osa-u.5 for 4344961	zma-u.5 for 103652991	zma-u.5 for 100502265	zma-u.5 for 100274676	sbi-r.1 for 8074646	sbi-r.1 for 8085158	ath-u.5 for VEL1	gma-u.5 for 100820128	gma-u.5 for 100819331	gma-u.5 for 100794721	sly-u.5 for 101257068	sly-u.5 for VIN3	bra-r.6 for 103861941	bra-r.6 for 103834685	bra-r.6 for 103852843	vvi-u.5 for 100251391	vvi-u.5 for 100266086	ppo-u.5 for 7488961	ppo-u.5 for 7467231	ppo-u.5 for 18100497	mtr-u.5 for 11433693	mtr-u.5 for 11443783	ghi-r.1 for 107958674	ghi-r.1 for 107926269	ghi-r.1 for 107919514	bna-r.1 for 106361152	bna-r.1 for 106390987	bna-r.1 for 106358544	sot-r.1 for 102603987	sot-r.1 for 102605824	sot-r.1 for 102598718	cit-r.1 for 102611668	cit-r.1 for 102615783	nta-r.1 for 107783766	nta-r.1 for 107824049	nta-r.1 for 107803958

Ortholog

Ortholog ID: 2835

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

VEL1

VIN3

Function^*

VIN3-like protein 2

uncharacterized LOC100274676

VIN3-like protein 2

vernalization5/VIN3-like protein

VIN3-like protein 2

VIN3-like protein 3

VIN3-like protein 2

vernalization insensitive 3

VIN3-like protein 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	4
osa00500	Starch and sucrose metabolism	3
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	4
sly04144	Endocytosis	3
sly05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	2
bra03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	4
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	2
sot04016	MAPK signaling pathway - plant	2
sot04075	Plant hormone signal transduction	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01240	Biosynthesis of cofactors	5
nta00410	beta-Alanine metabolism	3
nta00770	Pantothenate and CoA biosynthesis	3
nta00760	Nicotinate and nicotinamide metabolism	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	5
nta00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01240	Biosynthesis of cofactors	5
nta00410	beta-Alanine metabolism	3
nta00770	Pantothenate and CoA biosynthesis	3
nta00760	Nicotinate and nicotinamide metabolism	2
nta04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

100837188

100831969

123136328

123132281

123169027

123403939

4328327

4344961

103652991

100274676

100193423

8074646

8085158

829143

100819331

100794721

100785502

101257068

101055574

103861941

103834685

103852843

100251391

100266086

7488961

7467231

18100497

11433693

11443783

107958674

107919514

107907491

106361152

106358544

106411065

102603987

102605824

102598718

102611668

102615783

107783766

107803958

107793957

The preparation time of this page was 0.1 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	1	2	3	2	1	3	2	3	2	3	2	3	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100837188 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100837188 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**