ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100836489	DNA-directed RNA polymerase V subunit 5A
tae-r.2	123103030	DNA-directed RNA polymerases IV and V subunit 5B
tae-r.2	123111219	DNA-directed RNA polymerases IV and V subunit 5B
tae-r.2	123091673	DNA-directed RNA polymerase V subunit 5A
hvu-r.1	123448180	DNA-directed RNA polymerase V subunit 5A-like
hvu-r.1	123399999	DNA-directed RNA polymerases IV and V subunit 5B-like
osa-u.5	4351463	DNA-directed RNA polymerase V subunit 5A
osa-u.5	4349748	DNA-directed RNA polymerase V subunit 5A
zma-u.5	100273995	uncharacterized LOC100273995
sbi-r.1	8085637	DNA-directed RNA polymerase V subunit 5A
ath-u.5	RPB5D	RNA polymerase II fifth largest subunit, D
ath-u.5	NRPE5	Eukaryotic rpb5 RNA polymerase subunit family protein
sly-u.5	101252227	DNA-directed RNA polymerase V subunit 5A-like
sly-u.5	101255881	DNA-directed RNA polymerase V subunit 5A
bra-r.6	103841615	DNA-directed RNA polymerase V subunit 5A
vvi-u.5	100258335	DNA-directed RNA polymerase V subunit 5C
vvi-u.5	100853213	DNA-directed RNA polymerase V subunit 5A
ppo-u.5	7458931	DNA-directed RNA polymerase V subunit 5A
mtr-u.5	120579378	DNA-directed RNA polymerases IV and V subunit 5B
mtr-u.5	11419143	DNA-directed RNA polymerase V subunit 5A
mtr-u.5	25489110	DNA-directed RNA polymerase V subunit 5A
ghi-r.1	107891355	DNA-directed RNA polymerase V subunit 5A
ghi-r.1	107889380	DNA-directed RNA polymerase V subunit 5A
bna-r.1	106445468	DNA-directed RNA polymerase V subunit 5C
bna-r.1	106431374	DNA-directed RNA polymerase V subunit 5C-like
bna-r.1	106368028	DNA-directed RNA polymerase V subunit 5A
sot-r.1	102596627	DNA-directed RNA polymerase V subunit 5A
sot-r.1	102585816	DNA-directed RNA polymerase V subunit 5A-like
cit-r.1	102612864	DNA-directed RNA polymerase V subunit 5C
cit-r.1	102611161	DNA-directed RNA polymerase V subunit 5A
nta-r.1	107804980	DNA-directed RNA polymerase V subunit 5A-like
nta-r.1	107775202	DNA-directed RNA polymerase V subunit 5A

Top 50 coexpressed genes to 100836489 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100836489 (bdi-r.1 coexpression data)

CoexMap"100840962"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi03020 [list] [network] RNA polymerase (60 genes)

bdi03420 [list] [network] Nucleotide excision repair (85 genes)

GO BP

GO:0006351 [list] [network] DNA-templated transcription

(230 genes)

IEA

GO CC

GO MF

GO:0003899 [list] [network] DNA-directed RNA polymerase activity	(34 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1744 genes)	IEA

Protein

XP_003577067.2 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, chlo_mito 5, chlo 3

(predict for XP_003577067.2)

Subcellular
localization
TargetP

chlo 8, mito 3

(predict for XP_003577067.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100836489	tae-r.2 for 123103030	tae-r.2 for 123111219	tae-r.2 for 123091673	hvu-r.1 for 123448180	hvu-r.1 for 123399999	osa-u.5 for 4351463	osa-u.5 for 4349748	zma-u.5 for 100273995	sbi-r.1 for 8085637	ath-u.5 for RPB5D	ath-u.5 for NRPE5	sly-u.5 for 101252227	sly-u.5 for 101255881	bra-r.6 for 103841615	vvi-u.5 for 100258335	vvi-u.5 for 100853213	ppo-u.5 for 7458931	mtr-u.5 for 120579378	mtr-u.5 for 11419143	mtr-u.5 for 25489110	ghi-r.1 for 107891355	ghi-r.1 for 107889380	bna-r.1 for 106445468	bna-r.1 for 106431374	bna-r.1 for 106368028	sot-r.1 for 102596627	sot-r.1 for 102585816	cit-r.1 for 102612864	cit-r.1 for 102611161	nta-r.1 for 107804980	nta-r.1 for 107775202

Ortholog

Ortholog ID: 3672

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

RPB5D

NRPE5

Function^*