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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.5   4349417   beta-amylase 3, chloroplastic 
 osa-u.5   4348840   beta-amylase 1, chloroplastic-like 
 osa-u.5   4331577   beta-amylase 2, chloroplastic-like 
 zma-u.5   100502394   Beta-amylase 3 chloroplastic 
 zma-u.5   100281141   beta-amylase 
 zma-u.5   103637673   beta-amylase 3, chloroplastic 
 ath-u.5   BAM1   beta-amylase 1 
 ath-u.5   CT-BMY   chloroplast beta-amylase 
 gma-u.5   BMY2   beta-amylase 
 gma-u.5   100818063   beta-amylase 3, chloroplastic 
 gma-u.5   100784912   beta-amylase 3, chloroplastic 
 sly-u.5   101259175   beta-amylase 3, chloroplastic-like 
 sly-u.5   101253815   beta-amylase 3, chloroplastic 
 sly-u.5   BAM1   beta-amylase 
 vvi-u.5   100261291   beta-amylase 1, chloroplastic 
 vvi-u.5   100247246   beta-amylase 3, chloroplastic 
 vvi-u.5   100242636   beta-amylase 1, chloroplastic 
 ppo-u.5   7494763   beta-amylase 1, chloroplastic 
 ppo-u.5   7475438   beta-amylase 1, chloroplastic 
 ppo-u.5   18096911   beta-amylase 3, chloroplastic 
 mtr-u.5   11438460   beta-amylase 3, chloroplastic 
 mtr-u.5   11439428   beta-amylase 3, chloroplastic 
 mtr-u.5   25497342   beta-amylase 1, chloroplastic 

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Top 50 coexpressed genes to 4349417 (osa-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4349417 (osa-u.5 coexpression data)

CoexMap"100841343"


bdiLOC100841343 | Entrez gene ID : 100841343      
Species osa zma ath gma sly vvi ppo mtr cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 3 2 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi00500 [list] [network] Starch and sucrose metabolism (150 genes)
GO BP
GO:0000272 [list] [network] polysaccharide catabolic process  (39 genes)  IEA  
GO CC
GO MF
GO:0016161 [list] [network] beta-amylase activity  (11 genes)  IEA  
Protein XP_003571854.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_003571854.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_003571854.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.5
for
4349417

.
osa-u.5
for
4348840

.
osa-u.5
for
4331577

.
zma-u.5
for
100502394

.
zma-u.5
for
100281141

.
zma-u.5
for
103637673

.
ath-u.5
for
BAM1

.
ath-u.5
for
CT-BMY

.
gma-u.5
for
BMY2

.
gma-u.5
for
100818063

.
gma-u.5
for
100784912

.
sly-u.5
for
101259175

.
sly-u.5
for
101253815

.
sly-u.5
for
BAM1

.
vvi-u.5
for
100261291

.
vvi-u.5
for
100247246

.
vvi-u.5
for
100242636

.
ppo-u.5
for
7494763

.
ppo-u.5
for
7475438

.
ppo-u.5
for
18096911

.
mtr-u.5
for
11438460

.
mtr-u.5
for
11439428

.
mtr-u.5
for
25497342

.


Ortholog ID: 1176
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi nta nta
Symbol CT-BMY BAM1 LOC100784912 BMY2 LOC101259175 LOC101253815 LOC4331577 LOC4348840 LOC100281141 LOC100502394 LOC103860025 LOC103860895 LOC100261291 LOC100242636 LOC18096911 LOC7494763 LOC25493571 LOC11439428 LOC123052101 LOC123181646 LOC123449861 LOC107912196 LOC107888905 LOC106437457 LOC125607043 CHLRE_06g307150v5 LOC8070506 LOC8080586 LOC102584887 LOC102577806 LOC102626673 LOC100827802 LOC107814151 LOC107771686
Function* chloroplast beta-amylase beta-amylase 1 beta-amylase 3, chloroplastic beta-amylase beta-amylase 3, chloroplastic-like beta-amylase 3, chloroplastic beta-amylase 2, chloroplastic-like beta-amylase 1, chloroplastic-like beta-amylase Beta-amylase 3 chloroplastic beta-amylase 1, chloroplastic beta-amylase 3, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase 3, chloroplastic beta-amylase 1, chloroplastic beta-amylase 3, chloroplastic beta-amylase 3, chloroplastic beta-amylase 3, chloroplastic beta-amylase 3, chloroplastic beta-amylase 2, chloroplastic-like beta-amylase 3, chloroplastic beta-amylase 1, chloroplastic beta-amylase 3, chloroplastic-like beta-amylase 1, chloroplastic-like uncharacterized protein beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase PCT-BMYI beta-amylase 1, chloroplastic beta-amylase 3, chloroplastic beta-amylase 3, chloroplastic-like beta-amylase 3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00730 Thiamine metabolism 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
ath04016 MAPK signaling pathway - plant 3
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 5
gma00592 alpha-Linolenic acid metabolism 3
gma00640 Propanoate metabolism 2
gma00190 Oxidative phosphorylation 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 5
gma00592 alpha-Linolenic acid metabolism 3
gma00640 Propanoate metabolism 2
gma00190 Oxidative phosphorylation 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 5
osa04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00561 Glycerolipid metabolism 2
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00052 Galactose metabolism 3
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 3
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
bra00350 Tyrosine metabolism 3
bra00360 Phenylalanine metabolism 3
bra00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 6
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
tae01240 Biosynthesis of cofactors 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 10
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
bna00562 Inositol phosphate metabolism 4
bna00740 Riboflavin metabolism 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 5
sbi04075 Plant hormone signal transduction 5
sbi04141 Protein processing in endoplasmic reticulum 2
sbi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 3
sbi04075 Plant hormone signal transduction 3
sbi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00561 Glycerolipid metabolism 3
sot00280 Valine, leucine and isoleucine degradation 3
sot00100 Steroid biosynthesis 2
sot00564 Glycerophospholipid metabolism 2
sot00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 9
nta00100 Steroid biosynthesis 3
nta00561 Glycerolipid metabolism 3
nta00564 Glycerophospholipid metabolism 3
nta00565 Ether lipid metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827419 821975 100784912 547683 101259175 101253815 4331577 4348840 100281141 100502394 103860025 103860895 100261291 100242636 18096911 7494763 25493571 11439428 123052101 123181646 123449861 107912196 107888905 106437457 125607043 5716864 8070506 8080586 102584887 102577806 102626673 100827802 107814151 107771686
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