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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100841615   1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 
 osa-u.5   4329532   1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic 
 osa-u.5   4335763   1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic 
 osa-u.5   4342117   1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic-like 
 zma-u.5   542238   amylose extender 1 
 zma-u.5   542315   starch branching enzyme 1 
 zma-u.5   542342   starch branching enzyme 3 
 ath-u.5   SBE2.2   starch branching enzyme 2.2 
 ath-u.5   SBE2.1   starch branching enzyme 2.1 
 gma-u.5   100785968   1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 
 gma-u.5   100792499   1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 
 gma-u.5   100816963   1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 
 sly-u.5   101258151   1,4-alpha-glucan-branching enzyme 
 sly-u.5   101268420   1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 
 vvi-u.5   100257371   1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 
 vvi-u.5   100254475   1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic 
 ppo-u.5   7494695   1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 
 ppo-u.5   18100061   1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic 
 mtr-u.5   11427173   1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 
 mtr-u.5   25490305   1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 

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Top 50 coexpressed genes to 100841615 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100841615 (bdi-r.1 coexpression data)

CoexMap"100841615"


bdiLOC100841615 | Entrez gene ID : 100841615      
Species bdi osa zma ath gma sly vvi ppo mtr hvu bra cit bna sbi ghi sot nta cre tae
Paralog 1 3 3 2 3 2 2 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi00500 [list] [network] Starch and sucrose metabolism (150 genes)
GO BP
GO:0005978 [list] [network] glycogen biosynthetic process  (9 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (4615 genes)  IEA  
GO MF
GO:0003844 [list] [network] 1,4-alpha-glucan branching enzyme activity  (4 genes)  IEA  
GO:0004553 [list] [network] hydrolase activity, hydrolyzing O-glycosyl compounds  (357 genes)  IEA  
GO:0043169 [list] [network] cation binding  (1829 genes)  IEA  
Protein XP_003563249.1 [sequence] [blastp]
XP_014752291.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1,  cyto_mito 1  (predict for XP_003563249.1)
chlo 9,  nucl 1,  mito 1  (predict for XP_014752291.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_003563249.1)
chlo 7  (predict for XP_014752291.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100841615
osa-u.5
for
4329532
osa-u.5
for
4335763
osa-u.5
for
4342117
zma-u.5
for
542238
zma-u.5
for
542315
zma-u.5
for
542342
ath-u.5
for
SBE2.2
ath-u.5
for
SBE2.1
gma-u.5
for
100785968
gma-u.5
for
100792499
gma-u.5
for
100816963
sly-u.5
for
101258151
sly-u.5
for
101268420
vvi-u.5
for
100257371
vvi-u.5
for
100254475
ppo-u.5
for
7494695
ppo-u.5
for
18100061
mtr-u.5
for
11427173
mtr-u.5
for
25490305


Ortholog ID: 2136
Species bdi bdi tae tae hvu hvu osa osa zma zma sbi sbi ath ath gma gma sly sly bra bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna sot sot cit cit nta nta cre cre
Symbol LOC100841615 LOC100831694 LOC123045387 LOC780587 LOC123426641 LOC123412920 LOC4329532 LOC4342117 LOC542238 LOC542315 LOC8069225 LOC8059621 SBE2.2 SBE2.1 LOC100785968 LOC100816963 LOC101258151 LOC101268420 LOC103867285 LOC103865540 LOC100254475 LOC100257371 LOC7494695 LOC18100061 LOC11427173 LOC25490305 LOC107910685 LOC107948121 LOC106372643 LOC106430026 LOC102596498 LOC102590711 LOC102614944 LOC102613730 LOC107827216 LOC107778845 CHLRE_06g270100v5 CHLRE_10g444700v5
Function* 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic-like 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic-like 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic-like amylose extender 1 starch branching enzyme 1 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic starch branching enzyme 2.2 starch branching enzyme 2.1 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic-like 1,4-alpha-glucan-branching enzyme-like 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic-like 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic-like 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 7
bdi00520 Amino sugar and nucleotide sugar metabolism 2
bdi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 9
bdi00730 Thiamine metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 15
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 8
osa00520 Amino sugar and nucleotide sugar metabolism 3
osa01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 8
zma00260 Glycine, serine and threonine metabolism 2
zma00261 Monobactam biosynthesis 2
zma00270 Cysteine and methionine metabolism 2
zma00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 8
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 9
sbi00330 Arginine and proline metabolism 3
sbi00520 Amino sugar and nucleotide sugar metabolism 3
sbi01250 Biosynthesis of nucleotide sugars 3
sbi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 12
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 10
ath00520 Amino sugar and nucleotide sugar metabolism 2
ath01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 10
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 10
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
gma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 2
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 9
sly00520 Amino sugar and nucleotide sugar metabolism 4
sly01250 Biosynthesis of nucleotide sugars 4
sly00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 8
bra00520 Amino sugar and nucleotide sugar metabolism 2
bra01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 8
bra00730 Thiamine metabolism 3
bra01240 Biosynthesis of cofactors 3
bra00350 Tyrosine metabolism 2
bra00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 7
vvi00730 Thiamine metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 4
vvi00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 4
ppo00520 Amino sugar and nucleotide sugar metabolism 3
ppo01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 9
ppo04016 MAPK signaling pathway - plant 4
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 5
mtr00010 Glycolysis / Gluconeogenesis 2
mtr04082 Neuroactive ligand signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 7
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
mtr00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 15
ghi00520 Amino sugar and nucleotide sugar metabolism 4
ghi01250 Biosynthesis of nucleotide sugars 4
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 15
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 8
bna00860 Porphyrin metabolism 3
bna01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 8
bna00860 Porphyrin metabolism 3
bna01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 10
sot00520 Amino sugar and nucleotide sugar metabolism 3
sot01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 8
sot00520 Amino sugar and nucleotide sugar metabolism 5
sot01250 Biosynthesis of nucleotide sugars 5
sot00561 Glycerolipid metabolism 3
sot00566 Sulfoquinovose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 7
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 5
cit00520 Amino sugar and nucleotide sugar metabolism 3
cit00061 Fatty acid biosynthesis 3
cit01040 Biosynthesis of unsaturated fatty acids 3
cit01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 6
cre00520 Amino sugar and nucleotide sugar metabolism 3
cre01250 Biosynthesis of nucleotide sugars 3
cre00010 Glycolysis / Gluconeogenesis 2
cre00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 6
cre01200 Carbon metabolism 6
cre00710 Carbon fixation by Calvin cycle 5
cre00030 Pentose phosphate pathway 4
cre00520 Amino sugar and nucleotide sugar metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100841615 100831694 123045387 780587 123426641 123412920 4329532 4342117 542238 542315 8069225 8059621 831769 818212 100785968 100816963 101258151 101268420 103867285 103865540 100254475 100257371 7494695 18100061 11427173 25490305 107910685 107948121 106372643 106430026 102596498 102590711 102614944 102613730 107827216 107778845 5721860 5716160
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