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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100841837   E3 ubiquitin-protein ligase RFI2 
 tae-r.2   123180549   E3 ubiquitin-protein ligase RFI2 
 tae-r.2   123191574   E3 ubiquitin-protein ligase RFI2 
 tae-r.2   123113135   E3 ubiquitin-protein ligase RFI2 
 hvu-r.1   123425772   E3 ubiquitin-protein ligase RFI2-like 
 osa-u.5   4337844   E3 ubiquitin-protein ligase IPI1-like 
 osa-u.5   4326477   E3 ubiquitin-protein ligase IPI1-like 
 zma-u.5   100280330   uncharacterized LOC100280330 
 zma-u.5   100191616   uncharacterized LOC100191616 
 zma-u.5   100381535   uncharacterized LOC100381535 
 sbi-r.1   8069529   uncharacterized LOC8069529 
 sbi-r.1   8075337   uncharacterized LOC8075337 
 ath-u.5   AT3G05545   RING/U-box superfamily protein 
 gma-u.5   100789014   E3 ubiquitin-protein ligase RFI2 
 gma-u.5   100798107   E3 ubiquitin-protein ligase RFI2 
 gma-u.5   100807331   E3 ubiquitin-protein ligase RFI2 
 sly-u.5   AdBiL   E3 ubiquitin ligase AdBiL 
 bra-r.6   103849918   E3 ubiquitin-protein ligase RFI2 
 bra-r.6   103859098   E3 ubiquitin-protein ligase RFI2 
 bra-r.6   103870813   E3 ubiquitin-protein ligase RFI2 
 vvi-u.5   100267498   E3 ubiquitin-protein ligase RFI2 
 vvi-u.5   100251003   E3 ubiquitin-protein ligase RFI2 
 ppo-u.5   18098660   E3 ubiquitin-protein ligase RFI2 
 ppo-u.5   7478939   E3 ubiquitin-protein ligase RFI2 
 mtr-u.5   11407185   E3 ubiquitin-protein ligase RFI2 
 mtr-u.5   11434170   E3 ubiquitin-protein ligase RFI2 
 ghi-r.1   107910116   E3 ubiquitin-protein ligase RFI2 
 ghi-r.1   107919886   E3 ubiquitin-protein ligase RFI2 
 ghi-r.1   107927271   E3 ubiquitin-protein ligase RFI2 
 bna-r.1   125594324   E3 ubiquitin-protein ligase IPI1-like 
 bna-r.1   125594315   E3 ubiquitin-protein ligase IPI1-like 
 bna-r.1   125606365   E3 ubiquitin-protein ligase IPI1-like 
 sot-r.1   102581385   uncharacterized LOC102581385 
 cit-r.1   102624227   E3 ubiquitin-protein ligase RFI2 
 cit-r.1   102615689   E3 ubiquitin-protein ligase RFI2 
 nta-r.1   107784866   E3 ubiquitin-protein ligase RFI2 
 nta-r.1   107831015   E3 ubiquitin-protein ligase RFI2 

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Top 50 coexpressed genes to 100841837 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100841837 (bdi-r.1 coexpression data)

CoexMap"100841837"


bdiLOC100841837 | Entrez gene ID : 100841837      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 2 3 2 1 3 1 3 2 2 2 3 3 1 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (329 genes)  IEA  
Protein XP_003568901.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  vacu 1  (predict for XP_003568901.1)
Subcellular
localization
TargetP
other 9  (predict for XP_003568901.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100841837
tae-r.2
for
123180549
tae-r.2
for
123191574
tae-r.2
for
123113135
hvu-r.1
for
123425772
osa-u.5
for
4337844
osa-u.5
for
4326477
zma-u.5
for
100280330
zma-u.5
for
100191616
zma-u.5
for
100381535
sbi-r.1
for
8069529
sbi-r.1
for
8075337
ath-u.5
for
AT3G05545
gma-u.5
for
100789014
gma-u.5
for
100798107
gma-u.5
for
100807331
sly-u.5
for
AdBiL
bra-r.6
for
103849918
bra-r.6
for
103859098
bra-r.6
for
103870813
vvi-u.5
for
100267498
vvi-u.5
for
100251003
ppo-u.5
for
18098660
ppo-u.5
for
7478939
mtr-u.5
for
11407185
mtr-u.5
for
11434170
ghi-r.1
for
107910116
ghi-r.1
for
107919886
ghi-r.1
for
107927271
bna-r.1
for
125594324
bna-r.1
for
125594315
bna-r.1
for
125606365
sot-r.1
for
102581385
cit-r.1
for
102624227
cit-r.1
for
102615689
nta-r.1
for
107784866
nta-r.1
for
107831015


Ortholog ID: 3569
Species bdi tae tae tae hvu osa osa zma zma zma sbi sbi ath gma gma gma sly bra bra bra vvi vvi ppo ppo mtr mtr ghi ghi ghi bna bna bna sot cit cit nta nta
Symbol LOC100841837 LOC123180549 LOC123191574 LOC123113135 LOC123425772 LOC4337844 LOC4326477 LOC100280330 LOC100191616 LOC100381535 LOC8069529 LOC8075337 AT3G05545 LOC100789014 LOC100798107 LOC100815923 AdBiL LOC103849918 LOC103859098 LOC103870813 LOC100267498 LOC100251003 LOC18098660 LOC7478939 LOC11407185 LOC11434170 LOC107919886 LOC107926888 LOC107893283 LOC111214161 LOC111206216 LOC106382214 LOC102581385 LOC102624227 LOC102615689 LOC107784866 LOC107831015
Function* E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2-like E3 ubiquitin-protein ligase IPI1-like E3 ubiquitin-protein ligase IPI1-like uncharacterized LOC100280330 uncharacterized LOC100191616 uncharacterized LOC100381535 uncharacterized LOC8069529 uncharacterized LOC8075337 RING/U-box superfamily protein E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin ligase AdBiL E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2-like E3 ubiquitin-protein ligase IPI1-like E3 ubiquitin-protein ligase RFI2-like uncharacterized LOC102581385 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2 E3 ubiquitin-protein ligase RFI2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 2
tae04120 Ubiquitin mediated proteolysis 2
tae00270 Cysteine and methionine metabolism 2
tae04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
ath05100 Bacterial invasion of epithelial cells 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 3
gma03018 RNA degradation 2
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 3
vvi01200 Carbon metabolism 2
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo00562 Inositol phosphate metabolism 2
ppo04070 Phosphatidylinositol signaling system 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo04141 Protein processing in endoplasmic reticulum 3
ppo04075 Plant hormone signal transduction 2
ppo03083 Polycomb repressive complex 2
ppo00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 4
sot03015 mRNA surveillance pathway 3
sot04136 Autophagy - other 3
sot04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00510 N-Glycan biosynthesis 2
cit00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100841837 123180549 123191574 123113135 123425772 4337844 4326477 100280330 100191616 100381535 8069529 8075337 819720 100789014 100798107 100815923 101256712 103849918 103859098 103870813 100267498 100251003 18098660 7478939 11407185 11434170 107919886 107926888 107893283 111214161 111206216 106382214 102581385 102624227 102615689 107784866 107831015
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