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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100842973   ribosomal RNA small subunit methyltransferase, chloroplastic 
 tae-r.2   123135839   ribosomal RNA small subunit methyltransferase, chloroplastic 
 tae-r.2   123143364   ribosomal RNA small subunit methyltransferase, chloroplastic 
 tae-r.2   123131875   ribosomal RNA small subunit methyltransferase, chloroplastic 
 hvu-r.1   123401918   ribosomal RNA small subunit methyltransferase, chloroplastic 
 osa-u.5   9271200   ribosomal RNA small subunit methyltransferase, chloroplastic 
 zma-u.5   100285018   uncharacterized LOC100285018 
 sbi-r.1   8068269   ribosomal RNA small subunit methyltransferase, chloroplastic 
 ath-u.5   PFC1   Ribosomal RNA adenine dimethylase family protein 
 gma-u.5   100790726   ribosomal RNA small subunit methyltransferase, chloroplastic 
 gma-u.5   100780381   ribosomal RNA small subunit methyltransferase, chloroplastic 
 sly-u.5   101258502   ribosomal RNA small subunit methyltransferase, chloroplastic 
 bra-r.6   103843813   ribosomal RNA small subunit methyltransferase, chloroplastic 
 vvi-u.5   100264412   ribosomal RNA small subunit methyltransferase, chloroplastic 
 ppo-u.5   7464904   ribosomal RNA small subunit methyltransferase, chloroplastic 
 mtr-u.5   11432602   ribosomal RNA small subunit methyltransferase, chloroplastic 
 ghi-r.1   107960552   ribosomal RNA small subunit methyltransferase, chloroplastic 
 ghi-r.1   107911943   ribosomal RNA small subunit methyltransferase, chloroplastic 
 bna-r.1   106434179   ribosomal RNA small subunit methyltransferase, chloroplastic 
 bna-r.1   106426082   ribosomal RNA small subunit methyltransferase, chloroplastic-like 
 sot-r.1   102595371   ribosomal RNA small subunit methyltransferase, chloroplastic 
 cit-r.1   102623217   ribosomal RNA small subunit methyltransferase, chloroplastic 
 nta-r.1   107796843   ribosomal RNA small subunit methyltransferase, chloroplastic 
 nta-r.1   107801651   ribosomal RNA small subunit methyltransferase, chloroplastic-like 
 cre-r.1   CHLRE_06g309300v5   uncharacterized protein 

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Top 50 coexpressed genes to 100842973 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100842973 (bdi-r.1 coexpression data)

CoexMap"100842973"


bdiLOC100842973 | Entrez gene ID : 100842973      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031167 [list] [network] rRNA methylation  (25 genes)  IEA  
GO CC
GO:0005759 [list] [network] mitochondrial matrix  (72 genes)  IEA  
GO MF
GO:0000179 [list] [network] rRNA (adenine-N6,N6-)-dimethyltransferase activity  (4 genes)  IEA  
Protein XP_003573655.1 [sequence] [blastp]
XP_024318304.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1  (predict for XP_003573655.1)
chlo 6,  plas 2,  E.R. 2,  E.R._plas 2  (predict for XP_024318304.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_003573655.1)
chlo 9  (predict for XP_024318304.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100842973
tae-r.2
for
123135839
tae-r.2
for
123143364
tae-r.2
for
123131875
hvu-r.1
for
123401918
osa-u.5
for
9271200
zma-u.5
for
100285018
sbi-r.1
for
8068269
ath-u.5
for
PFC1
gma-u.5
for
100790726
gma-u.5
for
100780381
sly-u.5
for
101258502
bra-r.6
for
103843813
vvi-u.5
for
100264412
ppo-u.5
for
7464904
mtr-u.5
for
11432602
ghi-r.1
for
107960552
ghi-r.1
for
107911943
bna-r.1
for
106434179
bna-r.1
for
106426082
sot-r.1
for
102595371
cit-r.1
for
102623217
nta-r.1
for
107796843
nta-r.1
for
107801651
cre-r.1
for
CHLRE_06g309300v5


Ortholog ID: 10480
Species bdi tae tae tae hvu osa zma sbi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC100842973 LOC123135839 LOC123143364 LOC123131875 LOC123401918 LOC9271200 LOC100285018 LOC8068269 PFC1 LOC100790726 LOC100780381 LOC101258502 LOC103843813 LOC100264412 LOC7464904 LOC11432602 LOC107960552 LOC107911943 LOC106434179 LOC106426082 LOC102595371 LOC102623217 LOC107796843 LOC107801651 CHLRE_06g309300v5
Function* ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic uncharacterized LOC100285018 ribosomal RNA small subunit methyltransferase, chloroplastic Ribosomal RNA adenine dimethylase family protein ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic-like ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic ribosomal RNA small subunit methyltransferase, chloroplastic-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00220 Arginine biosynthesis 2
gma00330 Arginine and proline metabolism 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100842973 123135839 123143364 123131875 123401918 9271200 100285018 8068269 839283 100790726 100780381 101258502 103843813 100264412 7464904 11432602 107960552 107911943 106434179 106426082 102595371 102623217 107796843 107801651 5716827
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