ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100844987	deSI-like protein At4g17486
bdi-r.1	100838757	deSI-like protein At4g17486
bdi-r.1	100843033	deSI-like protein At4g17486
bdi-r.1	100844954	deSI-like protein At4g17486
tae-r.2	123098381	deSI-like protein At4g17486
tae-r.2	123147997	deSI-like protein At4g17486
tae-r.2	123054257	deSI-like protein At4g17486
hvu-r.1	123450141	deSI-like protein At4g17486
hvu-r.1	123449420	deSI-like protein At4g17486
hvu-r.1	123427580	deSI-like protein At4g17486
osa-u.5	4341303	deSI-like protein At4g17486
osa-u.5	4336575	deSI-like protein At4g17486
zma-u.5	100282449	EREBP-4 like protein
zma-u.5	100283076	EREBP-4 like protein
zma-u.5	100272295	DeSI-like protein
sbi-r.1	8061979	deSI-like protein At4g17486
sbi-r.1	8081883	deSI-like protein At4g17486
sbi-r.1	8073965	deSI-like protein At4g17486
ath-u.5	AT2G25190	PPPDE putative thiol peptidase family protein
ath-u.5	AT1G80690	PPPDE putative thiol peptidase family protein
ath-u.5	AT1G47740	PPPDE putative thiol peptidase family protein
gma-u.5	100802465	deSI-like protein At4g17486
gma-u.5	100804405	UPF0326 protein At4g17486-like
gma-u.5	100809235	UPF0326 protein At4g17486-like
sly-u.5	101244066	PPPDE putative thiol peptidase-like protein
sly-u.5	101243834	PPPDE putative thiol peptidase family protein
sly-u.5	101259258	deSI-like protein At4g17486
bra-r.6	103860916	deSI-like protein At4g17486
bra-r.6	103827657	deSI-like protein At4g17486
vvi-u.5	100268022	deSI-like protein At4g17486
vvi-u.5	100252589	deSI-like protein At4g17486
ppo-u.5	7456390	deSI-like protein At4g17486
ppo-u.5	7471646	deSI-like protein At4g17486
mtr-u.5	11415476	deSI-like protein At4g17486
mtr-u.5	11430136	deSI-like protein At4g17486
mtr-u.5	11433509	deSI-like protein At4g17486
ghi-r.1	107933685	deSI-like protein At4g17486
ghi-r.1	107933020	deSI-like protein At4g17486
ghi-r.1	107932295	deSI-like protein At4g17486
bna-r.1	125575106	deSI-like protein At4g17486
bna-r.1	111208184	deSI-like protein At4g17486
bna-r.1	111207276	deSI-like protein At4g17486
sot-r.1	102601212	deSI-like protein At4g17486
sot-r.1	102604322	deSI-like protein At4g17486
sot-r.1	102598367	deSI-like protein At4g17486
cit-r.1	EREBP	deSI-like protein At4g17486-like
cit-r.1	102615322	deSI-like protein At4g17486
nta-r.1	107788537	deSI-like protein At4g17486
nta-r.1	107827822	deSI-like protein At4g17486
nta-r.1	107759936	deSI-like protein At4g17486
cre-r.1	CHLRE_17g698100v5	uncharacterized protein

Top 50 coexpressed genes to 100844987 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100844987 (bdi-r.1 coexpression data)

CoexMap"100844987"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016579 [list] [network] protein deubiquitination

(86 genes)

IEA

GO CC

GO MF

GO:0101005 [list] [network] deubiquitinase activity

(83 genes)

IEA

Protein

XP_003570012.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, nucl 2

(predict for XP_003570012.1)

Subcellular
localization
TargetP

other 7, scret 5

(predict for XP_003570012.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100844987	bdi-r.1 for 100838757	bdi-r.1 for 100843033	bdi-r.1 for 100844954	tae-r.2 for 123098381	tae-r.2 for 123147997	tae-r.2 for 123054257	hvu-r.1 for 123450141	hvu-r.1 for 123449420	hvu-r.1 for 123427580	osa-u.5 for 4341303	osa-u.5 for 4336575	zma-u.5 for 100282449	zma-u.5 for 100283076	zma-u.5 for 100272295	sbi-r.1 for 8061979	sbi-r.1 for 8081883	sbi-r.1 for 8073965	ath-u.5 for AT2G25190	ath-u.5 for AT1G80690	ath-u.5 for AT1G47740	gma-u.5 for 100802465	gma-u.5 for 100804405	gma-u.5 for 100809235	sly-u.5 for 101244066	sly-u.5 for 101243834	sly-u.5 for 101259258	bra-r.6 for 103860916	bra-r.6 for 103827657	vvi-u.5 for 100268022	vvi-u.5 for 100252589	ppo-u.5 for 7456390	ppo-u.5 for 7471646	mtr-u.5 for 11415476	mtr-u.5 for 11430136	mtr-u.5 for 11433509	ghi-r.1 for 107933685	ghi-r.1 for 107933020	ghi-r.1 for 107932295	bna-r.1 for 125575106	bna-r.1 for 111208184	bna-r.1 for 111207276	sot-r.1 for 102601212	sot-r.1 for 102604322	sot-r.1 for 102598367	cit-r.1 for EREBP	cit-r.1 for 102615322	nta-r.1 for 107788537	nta-r.1 for 107827822	nta-r.1 for 107759936	cre-r.1 for CHLRE_17g698100v5

Ortholog

Ortholog ID: 227

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

deSI-like protein At4g17486

EREBP-4 like protein

uncharacterized LOC100216975

uncharacterized LOC100191813

deSI-like protein At4g17486

PPPDE putative thiol peptidase family protein

UPF0326 protein At4g17486-like

deSI-like protein At4g17486

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	2
tae00513	Various types of N-glycan biosynthesis	2
tae04141	Protein processing in endoplasmic reticulum	2
tae04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	3
tae00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
tae01230	Biosynthesis of amino acids	3
tae00190	Oxidative phosphorylation	2
tae00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04120	Ubiquitin mediated proteolysis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	4
zma00561	Glycerolipid metabolism	2
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00270	Cysteine and methionine metabolism	3
gma01200	Carbon metabolism	3
gma00020	Citrate cycle (TCA cycle)	2
gma00566	Sulfoquinovose metabolism	2
gma00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04130	SNARE interactions in vesicular transport	3
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	3
ppo04120	Ubiquitin mediated proteolysis	3
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	10
ghi03083	Polycomb repressive complex	6
ghi04141	Protein processing in endoplasmic reticulum	6
ghi00480	Glutathione metabolism	2
ghi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03272	Virion - Hepatitis viruses	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna04136	Autophagy - other	4
bna04382	Cornified envelope formation	4
bna04130	SNARE interactions in vesicular transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot04141	Protein processing in endoplasmic reticulum	3
sot03040	Spliceosome	2
sot04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

100838757

100843033

100844954

123098381

123144992

123164998

123450141

123449420

123401249

4341303

4331955

4331282

100282449

100216975

100191813

8061979

8083353

8081565

844408

832588

827462

100809235

100817929

100786432

101265568

101252386

101244056

103874384

103868706

103864614

100252589

100245551

7471646

18107652

7493418

11433509

25491272

11443239

107929378

107888399

107940101

125609246

106401816

102604322

102600972

102582965

102615322

102625145

107807020

107829525

107785758

5717355

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Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	3	2	3	3	3	3	3	2	2	2	3	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100844987 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100844987 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**