Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100845489   heterogeneous nuclear ribonucleoprotein A2 homolog 2 
 osa-u.5   4325826   heterogeneous nuclear ribonucleoprotein 1 
 zma-u.5   100193201   heterogeneous nuclear ribonucleoprotein 27C 
 zma-u.5   100285224   heterogeneous nuclear ribonucleoprotein 27C 
 ath-u.5   AT4G36960   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100808084   heterogeneous nuclear ribonucleoprotein 1 
 gma-u.5   100795240   DAZ-associated protein 1 
 sly-u.5   101267666   uncharacterized LOC101267666 
 vvi-u.5   100247389   uncharacterized LOC100247389 
 ppo-u.5   7483111   uncharacterized LOC7483111 
 ppo-u.5   7489734   uncharacterized LOC7489734 
 mtr-u.5   11410929   RNA-binding protein Musashi homolog 2 
 mtr-u.5   120577404   RNA-binding protein Musashi homolog 2 

close


Top 50 coexpressed genes to 100845489 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 100845489 (bdi-r.1 coexpression data)

CoexMap"100845489"


bdiLOC100845489 | Entrez gene ID : 100845489    
Species bdi osa zma ath gma sly vvi ppo mtr hvu bra cit bna sbi ghi sot nta cre tae
Paralog 1 1 2 1 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi03015 [list] [network] mRNA surveillance pathway (130 genes)
GO BP
GO:0017148 [list] [network] negative regulation of translation  (29 genes)  IEA  
GO CC
GO MF
GO:0030598 [list] [network] rRNA N-glycosylase activity  (12 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1239 genes)  IEA  
Protein XP_010231470.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 1,  plas 1,  pero 1,  chlo_mito 1  (predict for XP_010231470.1)
Subcellular
localization
TargetP
other 8  (predict for XP_010231470.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100845489
osa-u.5
for
4325826
zma-u.5
for
100193201
zma-u.5
for
100285224
ath-u.5
for
AT4G36960
gma-u.5
for
100808084
gma-u.5
for
100795240
sly-u.5
for
101267666
vvi-u.5
for
100247389
ppo-u.5
for
7483111
ppo-u.5
for
7489734
mtr-u.5
for
11410929
mtr-u.5
for
120577404


Ortholog ID: 6948
Species bdi tae tae osa zma zma sbi ath gma gma sly bra vvi ppo ppo mtr mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC100845489 LOC123181828 LOC123130390 LOC4325826 LOC100285224 LOC100193201 LOC110433925 AT4G36960 LOC100795240 LOC100808084 LOC101267666 LOC103862517 LOC100247389 LOC7489734 LOC7483111 LOC120577404 LOC11410929 LOC107913246 LOC107925197 LOC106445512 LOC106410704 LOC102591610 LOC102620595 LOC107778564 LOC107788630 CHLRE_16g662702v5
Function* heterogeneous nuclear ribonucleoprotein A2 homolog 2 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 27C heterogeneous nuclear ribonucleoprotein 27C RNA-binding protein Musashi homolog 2 RNA-binding (RRM/RBD/RNP motifs) family protein DAZ-associated protein 1 heterogeneous nuclear ribonucleoprotein 1 uncharacterized LOC101267666 heterogeneous nuclear ribonucleoprotein A/B uncharacterized LOC100247389 uncharacterized LOC7489734 uncharacterized LOC7483111 RNA-binding protein Musashi homolog 2 RNA-binding protein Musashi homolog 2 DAZ-associated protein 1 heterogeneous nuclear ribonucleoprotein A2 homolog 2 RNA-binding protein Musashi homolog 2 RNA-binding protein Musashi homolog 2 heterogeneous nuclear ribonucleoprotein D-like uncharacterized LOC102620595 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi03040 Spliceosome 3
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03013 Nucleocytoplasmic transport 2
bdi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 8
tae04382 Cornified envelope formation 3
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
tae00330 Arginine and proline metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 8
tae04382 Cornified envelope formation 3
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 4
zma03040 Spliceosome 4
zma03013 Nucleocytoplasmic transport 2
zma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03008 Ribosome biogenesis in eukaryotes 2
zma04712 Circadian rhythm - plant 2
zma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 8
sbi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03250 Viral life cycle - HIV-1 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 8
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi04141 Protein processing in endoplasmic reticulum 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03083 Polycomb repressive complex 3
ppo03082 ATP-dependent chromatin remodeling 2
ppo04141 Protein processing in endoplasmic reticulum 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 5
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
mtr00510 N-Glycan biosynthesis 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
mtr03015 mRNA surveillance pathway 4
mtr03010 Ribosome 2
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03013 Nucleocytoplasmic transport 3
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta03013 Nucleocytoplasmic transport 3
nta03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100845489 123181828 123130390 4325826 100285224 100193201 110433925 829850 100795240 100808084 101267666 103862517 100247389 7489734 7483111 120577404 11410929 107913246 107925197 106445512 106410704 102591610 102620595 107778564 107788630 5723512
The preparation time of this page was 0.1 [sec].