ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	VIN3	vernalization insensitive 3
sly-r.6	VIN3	vernalization insensitive 3
sly-u.5	101257068	VIN3-like protein 2
ath-u.5	VEL1	vernalization5/VIN3-like protein
gma-u.5	100820128	VIN3-like protein 2
gma-u.5	100819331	VIN3-like protein 2
gma-u.5	100794721	VIN3-like protein 2
vvi-u.5	100266086	VIN3-like protein 2
vvi-u.5	100251391	VIN3-like protein 2
ppo-u.5	7488961	VIN3-like protein 2
ppo-u.5	18100497	VIN3-like protein 2
ppo-u.5	7467231	VIN3-like protein 2
mtr-u.5	11433693	VIN3-like protein 2
mtr-u.5	11443783	VIN3-like protein 2
osa-u.5	4328327	VIN3-like protein 2
osa-u.5	4344961	VIN3-like protein 2
zma-u.5	100502265	uncharacterized LOC100502265
zma-u.5	100274676	uncharacterized LOC100274676
zma-u.5	100193423	VIN3-like protein 2

Annotation

functional annotation

KEGG

GO BP

GO:0010048 [list] [network] vernalization response	(3 genes)	IEA
GO:0040029 [list] [network] epigenetic regulation of gene expression	(65 genes)	IEA

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(3982 genes)

IEA

Protein

NP_001266153.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 4, chlo 2, cysk_nucl 2, nucl_plas 2

(predict for NP_001266153.1)

Subcellular
localization
TargetP

other 9

(predict for NP_001266153.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for VIN3	sly-r.6 for VIN3	sly-u.5 for 101257068	ath-u.5 for VEL1	gma-u.5 for 100820128	gma-u.5 for 100819331	gma-u.5 for 100794721	vvi-u.5 for 100266086	vvi-u.5 for 100251391	ppo-u.5 for 7488961	ppo-u.5 for 18100497	ppo-u.5 for 7467231	mtr-u.5 for 11433693	mtr-u.5 for 11443783	osa-u.5 for 4328327	osa-u.5 for 4344961	zma-u.5 for 100502265	zma-u.5 for 100274676	zma-u.5 for 100193423

Ortholog

Ortholog ID: 2835

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

VIN3

VEL1

Function^*

vernalization insensitive 3

VIN3-like protein 2

vernalization5/VIN3-like protein

VIN3-like protein 3

VIN3-like protein 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	4
sly04144	Endocytosis	3
sly05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	2
sot04016	MAPK signaling pathway - plant	2
sot04075	Plant hormone signal transduction	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01240	Biosynthesis of cofactors	5
nta00410	beta-Alanine metabolism	3
nta00770	Pantothenate and CoA biosynthesis	3
nta00760	Nicotinate and nicotinamide metabolism	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	5
nta00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	4
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	4
osa00500	Starch and sucrose metabolism	3
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

101055574

101257068

102605824

102598718

107793957

107803958

829143

100785502

100794721

103852843

103834685

100266086

100251391

18100497

7488961

11443783

11433693

107958674

107919514

106358544

106411065

102611668

102615783

4344961

4328327

103652991

100193423

123169027

123136328

123403939

8074646

8085158

100837188

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to VIN3 (sly-u.5 coexpression data)

Top 50 enrichment test to VIN3 (sly-u.5 coexpression data)


Species	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	1	3	2	3	2	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to VIN3 (sly-u.5 coexpression data)

Top 50 enrichment test to VIN3 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**