ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101243943	chromodomain-helicase-DNA-binding protein 3
sly-r.6	101243943	chromodomain-helicase-DNA-binding protein 3
sly-u.5	101251257	helicase-like transcription factor CHR28
sot-r.1	102606384	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
sot-r.1	102599898	uncharacterized ATP-dependent helicase C23E6.02
nta-r.1	107812699	helicase-like transcription factor CHR28
nta-r.1	107819790	helicase-like transcription factor CHR28
nta-r.1	107819811	uncharacterized LOC107819811
ath-u.5	AT3G20010	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
ath-u.5	AT1G11100	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
gma-u.5	100795142	helicase-like transcription factor CHR28
gma-u.5	100802436	helicase-like transcription factor CHR28
gma-u.5	100805307	helicase-like transcription factor CHR28
bra-r.6	103871349	helicase-like transcription factor CHR28
bra-r.6	103869369	helicase-like transcription factor CHR27
bra-r.6	103859836	helicase-like transcription factor CHR27
vvi-u.5	100265351	helicase-like transcription factor CHR28
vvi-u.5	100256075	helicase-like transcription factor CHR28
ppo-u.5	7490807	helicase-like transcription factor CHR28
ppo-u.5	7485570	helicase-like transcription factor CHR28
mtr-u.5	25485683	helicase-like transcription factor CHR28
mtr-u.5	11428547	helicase-like transcription factor CHR28
ghi-r.1	107909005	helicase-like transcription factor CHR28
ghi-r.1	107962286	helicase-like transcription factor CHR28
ghi-r.1	107949003	helicase-like transcription factor CHR28
bna-r.1	106428886	helicase-like transcription factor CHR27
bna-r.1	106405798	helicase-like transcription factor CHR28
cit-r.1	102616342	helicase-like transcription factor CHR28
cit-r.1	102614358	helicase-like transcription factor CHR28
osa-u.5	4326436	helicase-like transcription factor CHR28
osa-u.5	4344820	helicase-like transcription factor CHR28
osa-u.5	4337089	helicase-like transcription factor CHR28
zma-u.5	103636595	helicase-like transcription factor CHR28
zma-u.5	109941204	uncharacterized LOC109941204
zma-u.5	100216734	uncharacterized LOC100216734
tae-r.2	123165699	helicase-like transcription factor CHR28
tae-r.2	123147146	helicase-like transcription factor CHR28
tae-r.2	123190550	helicase-like transcription factor CHR28
hvu-r.1	123427954	helicase-like transcription factor CHR28
hvu-r.1	123412809	helicase-like transcription factor CHR28
hvu-r.1	123444563	helicase-like transcription factor CHR28
sbi-r.1	8054708	helicase-like transcription factor CHR28
sbi-r.1	8069687	helicase-like transcription factor CHR28
sbi-r.1	8074750	helicase-like transcription factor CHR28
bdi-r.1	100833230	helicase-like transcription factor CHR28
bdi-r.1	100844087	helicase-like transcription factor CHR28
bdi-r.1	100844166	helicase-like transcription factor CHR28
cre-r.1	CHLRE_01g046237v5	uncharacterized protein

Top 50 coexpressed genes to 101243943 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101243943 (sly-u.5 coexpression data)

CoexMap"101243943"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006281 [list] [network] DNA repair

(281 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2947 genes)

IEA

GO MF

GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity	(54 genes)	IEA
GO:0005524 [list] [network] ATP binding	(1916 genes)	IEA

Protein

NP_001307630.1 [sequence] [blastp]
XP_010315815.1 [sequence] [blastp]
XP_010315816.1 [sequence] [blastp]
XP_025884816.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, chlo 1, cyto 1	(predict for NP_001307630.1)
nucl 7, chlo 1, cyto 1	(predict for XP_010315815.1)
nucl 9, cyto 1, golg 1	(predict for XP_010315816.1)
nucl 8, chlo 1, cyto 1, golg 1	(predict for XP_025884816.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001307630.1)
other 7	(predict for XP_010315815.1)
other 9	(predict for XP_010315816.1)
other 8, chlo 3	(predict for XP_025884816.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101243943	sly-r.6 for 101243943	sly-u.5 for 101251257	sot-r.1 for 102606384	sot-r.1 for 102599898	nta-r.1 for 107812699	nta-r.1 for 107819790	nta-r.1 for 107819811	ath-u.5 for AT3G20010	ath-u.5 for AT1G11100	gma-u.5 for 100795142	gma-u.5 for 100802436	gma-u.5 for 100805307	bra-r.6 for 103871349	bra-r.6 for 103869369	bra-r.6 for 103859836	vvi-u.5 for 100265351	vvi-u.5 for 100256075	ppo-u.5 for 7490807	ppo-u.5 for 7485570	mtr-u.5 for 25485683	mtr-u.5 for 11428547	ghi-r.1 for 107909005	ghi-r.1 for 107962286	ghi-r.1 for 107949003	bna-r.1 for 106428886	bna-r.1 for 106405798	cit-r.1 for 102616342	cit-r.1 for 102614358	osa-u.5 for 4326436	osa-u.5 for 4344820	osa-u.5 for 4337089	zma-u.5 for 103636595	zma-u.5 for 109941204	zma-u.5 for 100216734	tae-r.2 for 123165699	tae-r.2 for 123147146	tae-r.2 for 123190550	hvu-r.1 for 123427954	hvu-r.1 for 123412809	hvu-r.1 for 123444563	sbi-r.1 for 8054708	sbi-r.1 for 8069687	sbi-r.1 for 8074750	bdi-r.1 for 100833230	bdi-r.1 for 100844087	bdi-r.1 for 100844166	cre-r.1 for CHLRE_01g046237v5

Ortholog

Ortholog ID: 1204

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

EDA16

Function^*

chromodomain-helicase-DNA-binding protein 3