ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101243988	MRG family protein
sly-r.6	101243988	MRG family protein
sly-m.5	101243988	MRG family protein
sly-u.5	101249778	nuA4 complex subunit EAF3 homolog
sot-r.1	102581078	protein MRG1-like
sot-r.1	102602545	protein MRG1
nta-r.1	107764870	protein MRG1-like
nta-r.1	107767843	protein MRG1
nta-r.1	107793186	protein MRG2
ath-u.5	AT4G37280	MRG family protein
ath-u.5	AT1G02740	MRG family protein
gma-u.5	100808266	protein MRG1
gma-u.5	100800645	protein MRG2
gma-u.5	100782900	protein MRG1
bra-r.6	103843740	protein MRG2
bra-r.6	103861562	protein MRG1
vvi-u.5	100266105	protein MRG1
vvi-u.5	100242251	protein MRG1
ppo-u.5	7483086	protein MRG1
ppo-u.5	7464894	protein MRG2
mtr-u.5	25493500	protein MRG1
mtr-u.5	25489912	protein MRG2
ghi-r.1	107924149	protein MRG1
ghi-r.1	107941893	protein MRG1
bna-r.1	106426813	protein MRG1
bna-r.1	111215017	protein MRG1
bna-r.1	106369300	protein MRG2
cit-r.1	102625664	protein MRG1
cit-r.1	102619381	protein MRG2-like
osa-u.5	4334885	protein MRG1
osa-u.5	4350689	protein MRG1
zma-u.5	100282973	uncharacterized LOC100282973
tae-r.2	123187109	protein MRG1
tae-r.2	123051155	protein MRG1
hvu-r.1	123424445	protein MRG1
sbi-r.1	110434696	protein MRG1
bdi-r.1	100841603	protein MRG1
cre-r.1	CHLRE_16g692400v5	uncharacterized protein

Top 50 coexpressed genes to 101243988 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101243988 (sly-u.5 coexpression data)

CoexMap"101243988"

[Cytoscape]

Annotation

functional annotation

KEGG

sly03082 [list] [network] ATP-dependent chromatin remodeling (70 genes)

GO BP

GO:0006325 [list] [network] chromatin organization	(175 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1608 genes)	IEA

GO CC

GO:0000123 [list] [network] histone acetyltransferase complex	(43 genes)	IEA
GO:0005634 [list] [network] nucleus	(2947 genes)	IEA

GO MF

Protein

NP_001308405.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cysk 1, cyto 1, plas 1, cyto_plas 1

(predict for NP_001308405.1)

Subcellular
localization
TargetP

other 9

(predict for NP_001308405.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101243988	sly-r.6 for 101243988	sly-m.5 for 101243988	sly-u.5 for 101249778	sot-r.1 for 102581078	sot-r.1 for 102602545	nta-r.1 for 107764870	nta-r.1 for 107767843	nta-r.1 for 107793186	ath-u.5 for AT4G37280	ath-u.5 for AT1G02740	gma-u.5 for 100808266	gma-u.5 for 100800645	gma-u.5 for 100782900	bra-r.6 for 103843740	bra-r.6 for 103861562	vvi-u.5 for 100266105	vvi-u.5 for 100242251	ppo-u.5 for 7483086	ppo-u.5 for 7464894	mtr-u.5 for 25493500	mtr-u.5 for 25489912	ghi-r.1 for 107924149	ghi-r.1 for 107941893	bna-r.1 for 106426813	bna-r.1 for 111215017	bna-r.1 for 106369300	cit-r.1 for 102625664	cit-r.1 for 102619381	osa-u.5 for 4334885	osa-u.5 for 4350689	zma-u.5 for 100282973	tae-r.2 for 123187109	tae-r.2 for 123051155	hvu-r.1 for 123424445	sbi-r.1 for 110434696	bdi-r.1 for 100841603	cre-r.1 for CHLRE_16g692400v5

Ortholog

Ortholog ID: 4429

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

MRG family protein

nuA4 complex subunit EAF3 homolog

protein MRG1-like

protein MRG1

protein MRG2

protein MRG1

MRG family protein

protein MRG1

protein MRG2

protein MRG1

protein MRG2

protein MRG1

protein MRG2

protein MRG1

protein MRG2

protein MRG1

protein MRG2-like

protein MRG1

uncharacterized LOC100282973

protein MRG1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3
sot03050	Proteasome	3
sot03010	Ribosome	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2
nta03060	Protein export	2
nta04141	Protein processing in endoplasmic reticulum	2
nta03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	3
ath04120	Ubiquitin mediated proteolysis	3
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03410	Base excision repair	5
gma03030	DNA replication	4
gma03420	Nucleotide excision repair	3
gma03082	ATP-dependent chromatin remodeling	2
gma03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2
bra04712	Circadian rhythm - plant	2
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	3
bra03015	mRNA surveillance pathway	2
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00240	Pyrimidine metabolism	2
ppo00410	beta-Alanine metabolism	2
ppo00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03430	Mismatch repair	5
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03430	Mismatch repair	5
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	3
bna03015	mRNA surveillance pathway	3
bna03040	Spliceosome	3
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04130	SNARE interactions in vesicular transport	4
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	4
bna03082	ATP-dependent chromatin remodeling	2
bna00790	Folate biosynthesis	2
bna01240	Biosynthesis of cofactors	2
bna04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03082	ATP-dependent chromatin remodeling	2
cit04144	Endocytosis	2
cit05100	Bacterial invasion of epithelial cells	2
cit00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	3
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	3
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03013	Nucleocytoplasmic transport	3
cre03050	Proteasome	2

Expression

Expression pattern

Entrez Gene ID^*

101243988

101249778

102581078

102602545

107767843

107793186

107799421

829882

839455

100808266

100782900

100777259

103843740

103861562

100266105

100242251

7483086

7464894

25493500

25489912

107924149

107941893

111215017

106369300

106411824

102625664

102619381

4334885

4350689

100282973

123187109

123051155

123424445

110434696

100841603

5724846

The preparation time of this page was 0.2 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	2	3	2	2	2	2	2	3	2	2	1	2	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101243988 (sly-u.5 coexpression data)

Top 50 enrichment test to 101243988 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**