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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101245750   nuclear pore complex protein NUP98A 
 sly-r.6   101245750   nuclear pore complex protein NUP98A 
 ath-u.5   AT1G10390   Nucleoporin autopeptidase 
 ath-u.5   AT1G59660   Nucleoporin autopeptidase 
 gma-u.5   102668982   nuclear pore complex protein NUP98A 
 gma-u.5   100786534   nuclear pore complex protein NUP98A 
 gma-u.5   100789177   nuclear pore complex protein NUP98A 
 vvi-u.5   100249633   nuclear pore complex protein NUP98A 
 ppo-u.5   7455018   nuclear pore complex protein NUP98A 
 ppo-u.5   18096000   nuclear pore complex protein NUP98A 
 mtr-u.5   120577436   nuclear pore complex protein NUP98A 
 mtr-u.5   25484578   nuclear pore complex protein NUP98A 
 osa-u.5   4351598   nuclear pore complex protein NUP98A 
 osa-u.5   4351597   nuclear pore complex protein NUP98A 
 zma-u.5   101202711   Nuclear pore complex protein NUP98A 
 zma-u.5   100279429   uncharacterized LOC100279429 

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Top 50 coexpressed genes to 101245750 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101245750 (sly-u.5 coexpression data)

CoexMap"101245750"


slyLOC101245750 | Entrez gene ID : 101245750      
Species sly ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 2 2 3 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03013 [list] [network] Nucleocytoplasmic transport (106 genes)
GO BP
GO:0034398 [list] [network] telomere tethering at nuclear periphery  (5 genes)  IEA  
GO:0000973 [list] [network] post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery  (7 genes)  IEA  
GO:0006606 [list] [network] protein import into nucleus  (46 genes)  IEA  
GO:0006405 [list] [network] RNA export from nucleus  (47 genes)  IEA  
GO CC
GO:0044614 [list] [network] nuclear pore cytoplasmic filaments  (6 genes)  IEA  
GO:0005643 [list] [network] nuclear pore  (46 genes)  IEA  
GO MF
GO:0008139 [list] [network] nuclear localization sequence binding  (20 genes)  IEA  
GO:0017056 [list] [network] structural constituent of nuclear pore  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
Protein XP_004236952.2 [sequence] [blastp]
XP_010319417.2 [sequence] [blastp]
XP_010319418.2 [sequence] [blastp]
XP_069153000.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 3,  mito 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_004236952.2)
chlo 6,  nucl 3,  mito 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_010319417.2)
chlo 6,  nucl 3,  mito 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_010319418.2)
chlo 6,  nucl 3,  mito 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_069153000.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_004236952.2)
chlo 9  (predict for XP_010319417.2)
chlo 9  (predict for XP_010319418.2)
chlo 9  (predict for XP_069153000.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101245750
sly-r.6
for
101245750
ath-u.5
for
AT1G10390
ath-u.5
for
AT1G59660
gma-u.5
for
102668982
gma-u.5
for
100786534
gma-u.5
for
100789177
vvi-u.5
for
100249633
ppo-u.5
for
7455018
ppo-u.5
for
18096000
mtr-u.5
for
120577436
mtr-u.5
for
25484578
osa-u.5
for
4351598
osa-u.5
for
4351597
zma-u.5
for
101202711
zma-u.5
for
100279429


Ortholog ID: 3633
Species sly sot nta nta ath ath gma gma bra bra vvi ppo ppo mtr mtr ghi ghi bna bna cit cit osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC101245750 LOC102592631 LOC107823658 LOC107767733 AT1G59660 AT1G10390 LOC100786534 LOC102668982 LOC103871810 LOC103838591 LOC100249633 LOC7455018 LOC18096000 LOC25484578 LOC120577436 LOC107937282 LOC107904534 LOC106362415 LOC106453101 LOC102616555 LOC102620159 LOC4351597 LOC4351598 LOC101202711 LOC100279429 LOC123091721 LOC123069550 LOC123448128 LOC123443381 LOC110429746 LOC8073687 LOC100833671 LOC100821753 CHLRE_02g086887v5
Function* nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A-like nuclear pore complex protein NUP98A Nucleoporin autopeptidase Nucleoporin autopeptidase nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98B nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A-like nuclear pore complex protein NUP98A-like nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A Nuclear pore complex protein NUP98A uncharacterized LOC100279429 nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A-like nuclear pore complex protein NUP98A-like nuclear pore complex protein NUP98A-like nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A nuclear pore complex protein NUP98A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 2
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 6
ath03008 Ribosome biogenesis in eukaryotes 4
ath03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03015 mRNA surveillance pathway 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra02010 ABC transporters 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 5
bra03008 Ribosome biogenesis in eukaryotes 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03008 Ribosome biogenesis in eukaryotes 2
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00620 Pyruvate metabolism 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101245750 102592631 107823658 107767733 842256 837579 100786534 102668982 103871810 103838591 100249633 7455018 18096000 25484578 120577436 107937282 107904534 106362415 106453101 102616555 102620159 4351597 4351598 101202711 100279429 123091721 123069550 123448128 123443381 110429746 8073687 100833671 100821753 5727409
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