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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101245785   28 kDa ribonucleoprotein, chloroplastic 
 sly-r.6   101245785   28 kDa ribonucleoprotein, chloroplastic 
 sly-m.5   101245785   28 kDa ribonucleoprotein, chloroplastic 
 sot-r.1   102600274   28 kDa ribonucleoprotein, chloroplastic 
 nta-r.1   107782611   28 kDa ribonucleoprotein, chloroplastic 
 ath-u.5   AT2G35410   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100793319   RNA-binding domain-containing protein 
 gma-u.5   100792275   29 kDa ribonucleoprotein, chloroplastic 
 bra-r.6   103865452   28 kDa ribonucleoprotein, chloroplastic 
 vvi-u.5   100243747   RNA-binding protein CP29B, chloroplastic 
 ppo-u.5   18094157   28 kDa ribonucleoprotein, chloroplastic 
 mtr-u.5   11430294   RNA-binding protein CP31B, chloroplastic 
 ghi-r.1   107942197   31 kDa ribonucleoprotein, chloroplastic 
 ghi-r.1   107912177   33 kDa ribonucleoprotein, chloroplastic 
 ghi-r.1   107922799   33 kDa ribonucleoprotein, chloroplastic 
 bna-r.1   106447311   28 kDa ribonucleoprotein, chloroplastic-like 
 bna-r.1   106366974   28 kDa ribonucleoprotein, chloroplastic-like 
 cit-r.1   102624663   RNA-binding protein CP29B, chloroplastic 
 osa-u.5   4336824   28 kDa ribonucleoprotein, chloroplastic 
 zma-u.5   100281348   uncharacterized LOC100281348 
 tae-r.2   123190359   33 kDa ribonucleoprotein, chloroplastic 
 tae-r.2   123054503   33 kDa ribonucleoprotein, chloroplastic 
 tae-r.2   123046630   33 kDa ribonucleoprotein, chloroplastic 
 hvu-r.1   123427881   29 kDa ribonucleoprotein A, chloroplastic 
 sbi-r.1   8071081   28 kDa ribonucleoprotein, chloroplastic 

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Top 50 coexpressed genes to 101245785 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101245785 (sly-u.5 coexpression data)

CoexMap"101245785"


slyLOC101245785 | Entrez gene ID : 101245785      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi cre bdi
Paralog 3 1 1 1 2 1 1 1 1 3 2 1 1 1 3 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901259 [list] [network] chloroplast rRNA processing  (13 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (117 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (315 genes)  IEA  
Protein XP_004245902.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_004245902.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_004245902.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101245785
sly-r.6
for
101245785
sly-m.5
for
101245785
sot-r.1
for
102600274
nta-r.1
for
107782611
ath-u.5
for
AT2G35410
gma-u.5
for
100793319
gma-u.5
for
100792275
bra-r.6
for
103865452
vvi-u.5
for
100243747
ppo-u.5
for
18094157
mtr-u.5
for
11430294
ghi-r.1
for
107942197
ghi-r.1
for
107912177
ghi-r.1
for
107922799
bna-r.1
for
106447311
bna-r.1
for
106366974
cit-r.1
for
102624663
osa-u.5
for
4336824
zma-u.5
for
100281348
tae-r.2
for
123190359
tae-r.2
for
123054503
tae-r.2
for
123046630
hvu-r.1
for
123427881
sbi-r.1
for
8071081


Ortholog ID: 10696
Species sly sot nta ath gma gma bra vvi ppo mtr ghi ghi ghi bna bna cit osa zma tae tae tae hvu sbi
Symbol LOC101245785 LOC102600274 LOC107782611 AT2G35410 LOC100793319 LOC100792275 LOC103865452 LOC100243747 LOC18094157 LOC11430294 LOC107942197 LOC107922799 LOC107939752 LOC106447311 LOC106366974 LOC102624663 LOC4336824 LOC100281348 LOC123190359 LOC123054503 LOC123046630 LOC123427881 LOC8071081
Function* 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding domain-containing protein 29 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic RNA-binding protein CP29B, chloroplastic 28 kDa ribonucleoprotein, chloroplastic RNA-binding protein CP31B, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 33 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic-like RNA-binding protein CP29B, chloroplastic 28 kDa ribonucleoprotein, chloroplastic uncharacterized LOC100281348 33 kDa ribonucleoprotein, chloroplastic 33 kDa ribonucleoprotein, chloroplastic 33 kDa ribonucleoprotein, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic 28 kDa ribonucleoprotein, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 5
ath01240 Biosynthesis of cofactors 2
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 4
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 4
zma01230 Biosynthesis of amino acids 4
zma00710 Carbon fixation by Calvin cycle 3
zma03010 Ribosome 3
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00030 Pentose phosphate pathway 2
tae00710 Carbon fixation by Calvin cycle 2
tae01200 Carbon metabolism 2
tae01230 Biosynthesis of amino acids 2
tae00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 7
tae00710 Carbon fixation by Calvin cycle 6
tae00630 Glyoxylate and dicarboxylate metabolism 5
tae00020 Citrate cycle (TCA cycle) 3
tae00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
tae00900 Terpenoid backbone biosynthesis 2
tae00030 Pentose phosphate pathway 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi00195 Photosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101245785 102600274 107782611 818107 100793319 100792275 103865452 100243747 18094157 11430294 107942197 107922799 107939752 106447311 106366974 102624663 4336824 100281348 123190359 123054503 123046630 123427881 8071081
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