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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101245924   uncharacterized LOC101245924 
 sly-r.6   101245924   uncharacterized LOC101245924 
 ath-u.5   AT5G18230   transcription regulator NOT2/NOT3/NOT5 family protein 
 gma-u.5   100783415   CCR4-NOT transcription complex subunit 3 
 gma-u.5   100780204   CCR4-NOT transcription complex subunit 3 
 gma-u.5   100819202   general negative regulator of transcription subunit 3 
 vvi-u.5   100253711   uncharacterized LOC100253711 
 ppo-u.5   7482356   general negative regulator of transcription subunit 3 
 ppo-u.5   7469871   uncharacterized LOC7469871 
 mtr-u.5   11437872   CCR4-NOT transcription complex subunit 3 
 osa-u.5   4333598   uncharacterized LOC4333598 
 zma-u.5   100193927   uncharacterized LOC100193927 
 zma-u.5   103643788   CCR4-NOT transcription complex subunit 3 

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Top 50 coexpressed genes to 101245924 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101245924 (sly-u.5 coexpression data)

CoexMap"101245924"


slyLOC101245924 | Entrez gene ID : 101245924      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 3 1 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03018 [list] [network] RNA degradation (116 genes)
GO BP
GO:0000289 [list] [network] nuclear-transcribed mRNA poly(A) tail shortening  (5 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1608 genes)  IEA  
GO CC
GO:0030015 [list] [network] CCR4-NOT core complex  (25 genes)  IEA  
GO:0000932 [list] [network] P-body  (50 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
Protein XP_004252005.1 [sequence] [blastp]
XP_010314010.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  chlo 1,  mito 1,  cysk 1,  chlo_mito 1  (predict for XP_004252005.1)
nucl 4,  cyto 3,  chlo 1,  mito 1,  cysk 1,  golg 1,  chlo_mito 1  (predict for XP_010314010.1)
Subcellular
localization
TargetP
other 8  (predict for XP_004252005.1)
other 8  (predict for XP_010314010.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101245924

.
sly-r.6
for
101245924

.
ath-u.5
for
AT5G18230

.
gma-u.5
for
100783415

.
gma-u.5
for
100780204

.
gma-u.5
for
100819202

.
vvi-u.5
for
100253711

.
ppo-u.5
for
7482356

.
ppo-u.5
for
7469871

.
mtr-u.5
for
11437872

.
osa-u.5
for
4333598

.
zma-u.5
for
100193927

.
zma-u.5
for
103643788

.


Ortholog ID: 5837
Species ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G18230 LOC100819202 LOC100785965 LOC101245924 LOC4333598 LOC100193927 LOC103643788 LOC103856292 LOC103856293 LOC100253711 LOC7469871 LOC7482356 LOC11437872 LOC123087373 LOC123095601 LOC123446909 LOC107893651 LOC107920023 LOC106391346 LOC106387776 CHLRE_04g227350v5 LOC110430397 LOC102595437 LOC102613279 LOC100823027 LOC107822861 LOC107822036
Function* transcription regulator NOT2/NOT3/NOT5 family protein general negative regulator of transcription subunit 3 general negative regulator of transcription subunit 3 uncharacterized LOC101245924 uncharacterized LOC4333598 uncharacterized LOC100193927 CCR4-NOT transcription complex subunit 3 CCR4-NOT transcription complex subunit 3 CCR4-NOT transcription complex subunit 3 uncharacterized LOC100253711 uncharacterized LOC7469871 general negative regulator of transcription subunit 3 CCR4-NOT transcription complex subunit 3 CCR4-NOT transcription complex subunit 3 CCR4-NOT transcription complex subunit 3 general negative regulator of transcription subunit 3 CCR4-NOT transcription complex subunit 3 general negative regulator of transcription subunit 3 CCR4-NOT transcription complex subunit 3 CCR4-NOT transcription complex subunit 3 uncharacterized protein general negative regulator of transcription subunit 3 general negative regulator of transcription subunit 3 general negative regulator of transcription subunit 3 general negative regulator of transcription subunit 3 uncharacterized LOC107822861 uncharacterized LOC107822036
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03082 ATP-dependent chromatin remodeling 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 6
gma03018 RNA degradation 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03018 RNA degradation 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 5
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 4
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo04142 Lysosome 2
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
mtr04120 Ubiquitin mediated proteolysis 2
mtr00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 6
tae03018 RNA degradation 4
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 8
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04130 SNARE interactions in vesicular transport 2
cre04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
nta04142 Lysosome 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
nta03018 RNA degradation 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831941 100819202 100785965 101245924 4333598 100193927 103643788 103856292 103856293 100253711 7469871 7482356 11437872 123087373 123095601 123446909 107893651 107920023 106391346 106387776 5717919 110430397 102595437 102613279 100823027 107822861 107822036
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