Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 sly-u.5   NCED1   9-cis-epoxycarotenoid dioxygenase 
 ath-u.5   NCED3   nine-cis-epoxycarotenoid dioxygenase 3 
 gma-u.5   100780284   probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 
 gma-u.5   100814399   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 gma-u.5   100777166   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 vvi-u.5   100244362   9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic 
 vvi-u.5   NCED1   9-cis-epoxycarotenoid dioxygenase 1 
 vvi-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 ppo-u.5   7472358   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 ppo-u.5   18095516   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 mtr-u.5   120577706   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 mtr-u.5   25487063   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 osa-u.5   4342424   9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic 
 osa-u.5   4333566   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 
 osa-u.5   9270250   9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 
 zma-u.5   103648268   9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic 
 zma-u.5   100281391   uncharacterized LOC100281391 

close


Top 50 coexpressed genes to NCED2 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to NCED2 (sly-u.5 coexpression data)

CoexMap"101246826"


slyLOC101246826 | Entrez gene ID : 101246826      
Species sly ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 2 1 3 3 2 2 3 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00906 [list] [network] Carotenoid biosynthesis (39 genes)
GO BP
GO:0016121 [list] [network] carotene catabolic process  (12 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (123 genes)  IEA  
GO MF
GO:0010436 [list] [network] carotenoid dioxygenase activity  (12 genes)  IEA  
Protein XP_010321597.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 3,  nucl 1,  cyto 1,  E.R. 1,  cyto_nucl 1,  cyto_E.R. 1  (predict for XP_010321597.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_010321597.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
NCED2
sly-u.5
for
NCED1
ath-u.5
for
NCED3
gma-u.5
for
100780284
gma-u.5
for
100814399
gma-u.5
for
100777166
vvi-u.5
for
100244362
vvi-u.5
for
NCED1
vvi-u.5
for
NCED2
ppo-u.5
for
7472358
ppo-u.5
for
18095516
mtr-u.5
for
120577706
mtr-u.5
for
25487063
osa-u.5
for
4342424
osa-u.5
for
4333566
osa-u.5
for
9270250
zma-u.5
for
103648268
zma-u.5
for
100281391


Ortholog ID: 987
Species sly sot nta nta gma gma bra vvi vvi mtr mtr ghi ghi bna cit osa osa zma zma tae tae hvu hvu sbi bdi
Symbol NCED1 LOC102577733 LOC107814412 LOC107822968 LOC100814399 NCED2 LOC103870025 LOC100244362 NCED1 LOC120577706 LOC25487063 LOC107914792 LOC107909170 LOC106423568 NCED LOC4342424 LOC9270250 LOC103648268 LOC100281391 LOC123122716 LOC123110233 LOC123395880 LOC123452108 LOC8062208 LOC100822305
Function* 9-cis-epoxycarotenoid dioxygenase 9-cis-epoxy-carotenoid dioxygenase 2 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase 2 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic 9-cis-epoxycarotenoid dioxygenase 1 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like putative 9-cis-epoxycarotenoid dioxygenase 3 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic uncharacterized LOC100281391 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 6
sly04016 MAPK signaling pathway - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 4
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 4
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
gma00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 5
bra04075 Plant hormone signal transduction 5
bra00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 5
vvi04075 Plant hormone signal transduction 5
vvi00906 Carotenoid biosynthesis 4
vvi00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
mtr04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 6
ghi04075 Plant hormone signal transduction 6
ghi04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 5
ghi00908 Zeatin biosynthesis 4
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 3
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 5
zma04016 MAPK signaling pathway - plant 3
zma04075 Plant hormone signal transduction 3
zma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 6
zma04016 MAPK signaling pathway - plant 5
zma04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 9
tae04016 MAPK signaling pathway - plant 6
tae04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04016 MAPK signaling pathway - plant 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 3
sbi04075 Plant hormone signal transduction 3
sbi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 7
bdi04016 MAPK signaling pathway - plant 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 544163 102577733 107814412 107822968 100814399 100797882 103870025 100244362 100232942 120577706 25487063 107914792 107909170 106423568 102578064 4342424 9270250 103648268 100281391 123122716 123110233 123395880 123452108 8062208 100822305
The preparation time of this page was 0.1 [sec].