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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101247553   pre-mRNA-processing factor 39-1 
 sly-r.6   101247553   pre-mRNA-processing factor 39-1 
 sly-m.5   101247553   pre-mRNA-processing factor 39-1 
 sly-u.5   101258918   pre-mRNA-processing factor 39-2 
 ath-u.5   PRP39-2   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   PRP39   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100780705   RNA polymerase II degradation factor 1 
 gma-u.5   100787373   pre-mRNA-processing factor 39 
 gma-u.5   100810738   pre-mRNA-processing factor 39 
 vvi-u.5   100244562   pre-mRNA-processing factor 39-1 
 vvi-u.5   100243465   pre-mRNA-processing factor 39-2 
 ppo-u.5   7455695   pre-mRNA-processing factor 39-1 
 ppo-u.5   7461490   pre-mRNA-processing factor 39-1 
 mtr-u.5   11426586   uncharacterized LOC11426586 
 mtr-u.5   11430831   pre-mRNA-processing factor 39 
 osa-u.5   4345436   pre-mRNA-processing factor 39-2 
 osa-u.5   4332022   pre-mRNA-processing factor 39-1 
 zma-u.5   103643333   uncharacterized LOC103643333 
 zma-u.5   100383763   Tetratricopeptide repeat (TPR)-like superfamily protein 
 zma-u.5   100304428   uncharacterized LOC100304428 

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Top 50 coexpressed genes to 101247553 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101247553 (sly-u.5 coexpression data)

CoexMap"101247553"


slyLOC101247553 | Entrez gene ID : 101247553    
Species sly ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 4 2 3 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000395 [list] [network] mRNA 5'-splice site recognition  (5 genes)  IEA  
GO:0006396 [list] [network] RNA processing  (611 genes)  IEA  
GO CC
GO:0000243 [list] [network] commitment complex  (11 genes)  IEA  
GO:0071004 [list] [network] U2-type prespliceosome  (19 genes)  IEA  
GO:0005685 [list] [network] U1 snRNP  (23 genes)  IEA  
GO MF
GO:0030627 [list] [network] pre-mRNA 5'-splice site binding  (4 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004247135.1 [sequence] [blastp]
XP_010326347.1 [sequence] [blastp]
XP_010326348.1 [sequence] [blastp]
XP_069144991.1 [sequence] [blastp]
XP_069144992.1 [sequence] [blastp]
XP_069144993.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 2,  plas 1,  pero 1,  cysk 1,  golg 1,  golg_plas 1,  cysk_plas 1  (predict for XP_004247135.1)
nucl 5,  cyto 2,  plas 1,  pero 1,  cysk 1,  golg 1,  golg_plas 1,  cysk_plas 1  (predict for XP_010326347.1)
nucl 5,  cyto 2,  plas 1,  pero 1,  cysk 1,  golg 1,  golg_plas 1,  cysk_plas 1  (predict for XP_010326348.1)
nucl 5,  cyto 2,  plas 1,  pero 1,  cysk 1,  golg 1,  golg_plas 1,  cysk_plas 1  (predict for XP_069144991.1)
cyto 6,  chlo 4  (predict for XP_069144992.1)
cyto 6,  chlo 4  (predict for XP_069144993.1)
Subcellular
localization
TargetP
other 7  (predict for XP_004247135.1)
other 7  (predict for XP_010326347.1)
other 7  (predict for XP_010326348.1)
other 7  (predict for XP_069144991.1)
mito 7,  other 3  (predict for XP_069144992.1)
mito 7,  other 3  (predict for XP_069144993.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101247553
sly-r.6
for
101247553
sly-m.5
for
101247553
sly-u.5
for
101258918
ath-u.5
for
PRP39-2
ath-u.5
for
PRP39
gma-u.5
for
100780705
gma-u.5
for
100787373
gma-u.5
for
100810738
vvi-u.5
for
100244562
vvi-u.5
for
100243465
ppo-u.5
for
7455695
ppo-u.5
for
7461490
mtr-u.5
for
11426586
mtr-u.5
for
11430831
osa-u.5
for
4345436
osa-u.5
for
4332022
zma-u.5
for
103643333
zma-u.5
for
100383763
zma-u.5
for
100304428


Ortholog ID: 2673
Species sly sly sot sot nta nta ath ath gma gma bra bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna cit cit osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC101247553 LOC101258918 LOC102590021 LOC102585073 LOC107789835 LOC107789600 PRP39-2 PRP39 LOC100780705 LOC100787373 LOC103827735 LOC103836592 LOC100243465 LOC100244562 LOC7461490 LOC7455695 LOC11426586 LOC11430831 LOC107893821 LOC107905856 LOC125591572 LOC125594479 LOC102614451 LOC102607594 LOC4345436 LOC4332022 LOC100383763 LOC100304428 LOC123044657 LOC123131708 LOC123425869 LOC123425870 LOC8073505 LOC8081848 LOC100837794 LOC100842484 CHLRE_16g670300v5
Function* pre-mRNA-processing factor 39-1 pre-mRNA-processing factor 39-2 uncharacterized LOC102590021 pre-mRNA-processing factor 39 uncharacterized LOC107789835 pre-mRNA-processing factor 39-1 Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein RNA polymerase II degradation factor 1 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39-2 pre-mRNA-processing factor 39-1 pre-mRNA-processing factor 39-1 pre-mRNA-processing factor 39-1 uncharacterized LOC11426586 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39 putative uncharacterized protein DDB_G0271606 pre-mRNA-processing factor 39-2-like pre-mRNA-processing factor 39-2-like pre-mRNA-processing factor 39-1 pre-mRNA-processing factor 39-2 pre-mRNA-processing factor 39-2 pre-mRNA-processing factor 39-1 Tetratricopeptide repeat (TPR)-like superfamily protein uncharacterized LOC100304428 uncharacterized LOC123044657 pre-mRNA-processing factor 39 polyhomeotic-proximal chromatin protein uncharacterized LOC123425870 putative uncharacterized protein DDB_G0271606 pre-mRNA-processing factor 39 uncharacterized LOC100837794 pre-mRNA-processing factor 39 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03420 Nucleotide excision repair 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03008 Ribosome biogenesis in eukaryotes 2
bra03013 Nucleocytoplasmic transport 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
tae03040 Spliceosome 2
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101247553 101258918 102590021 102585073 107789835 107789600 834683 839314 100780705 100787373 103827735 103836592 100243465 100244562 7461490 7455695 11426586 11430831 107893821 107905856 125591572 125594479 102614451 102607594 4345436 4332022 100383763 100304428 123044657 123131708 123425869 123425870 8073505 8081848 100837794 100842484 5724786
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