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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   Cry3   cryptochrome DASH, chloroplastic/mitochondrial-like 
 sly-r.6   Cry3   cryptochrome DASH, chloroplastic/mitochondrial-like 
 ath-u.5   CRY3   cryptochrome 3 
 gma-u.5   100783312   cryptochrome DASH, chloroplastic/mitochondrial 
 vvi-u.5   100252689   cryptochrome DASH, chloroplastic/mitochondrial 
 mtr-u.5   11427347   cryptochrome DASH, chloroplastic/mitochondrial 
 osa-u.5   4341749   cryptochrome DASH, chloroplastic/mitochondrial-like 
 zma-u.5   100280309   uncharacterized LOC100280309 

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Top 50 coexpressed genes to Cry3 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to Cry3 (sly-u.5 coexpression data)

CoexMap"101248230"


slyCry3 | Entrez gene ID : 101248230      
Species sly ath gma vvi mtr osa zma bdi hvu bra cit bna ppo sbi ghi sot nta cre tae
Paralog 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000719 [list] [network] photoreactive repair  (3 genes)  IEA  
GO CC
GO MF
GO:0003904 [list] [network] deoxyribodipyrimidine photo-lyase activity  (7 genes)  IEA  
GO:0071949 [list] [network] FAD binding  (72 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1883 genes)  IEA  
Protein NP_001296304.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 4,  nucl 1  (predict for NP_001296304.1)
Subcellular
localization
TargetP
mito 3  (predict for NP_001296304.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
Cry3
sly-r.6
for
Cry3
ath-u.5
for
CRY3
gma-u.5
for
100783312
vvi-u.5
for
100252689
mtr-u.5
for
11427347
osa-u.5
for
4341749
zma-u.5
for
100280309


Ortholog ID: 9694
Species sly sot nta nta ath gma bra bra vvi mtr ghi ghi bna bna cit osa zma tae tae hvu sbi bdi cre
Symbol Cry3 LOC102585633 LOC107782681 LOC107788282 CRY3 LOC100783312 LOC103874351 LOC103837069 LOC100252689 LOC11427347 LOC107902007 LOC107961766 LOC106381064 LOC106348498 LOC102612082 LOC4341749 LOC100280309 LOC123164714 LOC123157423 LOC123413527 LOC8069379 LOC100845878 CHLRE_02g078939v5
Function* cryptochrome DASH, chloroplastic/mitochondrial-like cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome 3 cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial-like cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial-like uncharacterized LOC100280309 cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath00940 Phenylpropanoid biosynthesis 2
ath00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 2
gma00941 Flavonoid biosynthesis 2
gma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00760 Nicotinate and nicotinamide metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00941 Flavonoid biosynthesis 4
bdi00940 Phenylpropanoid biosynthesis 3
bdi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101248230 102585633 107782681 107788282 832554 100783312 103874351 103837069 100252689 11427347 107902007 107961766 106381064 106348498 102612082 4341749 100280309 123164714 123157423 123413527 8069379 100845878 5727263
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