ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101248395	chaperone protein ClpB4, mitochondrial
sly-r.6	101248395	chaperone protein ClpB4, mitochondrial
sly-u.5	101248184	chaperone protein ClpD, chloroplastic
sly-u.5	CD4B	ATP-dependent protease
sly-u.5	101254583	chaperone protein ClpB1
sot-r.1	102584342	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic-like
sot-r.1	102583354	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic
sot-r.1	102577597	chaperone protein ClpB1
nta-r.1	107771216	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic
nta-r.1	107804165	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like
nta-r.1	107817067	chaperone protein ClpB3, chloroplastic
ath-u.5	HSP101	heat shock protein 101
ath-u.5	ERD1	Clp ATPase
ath-u.5	CLPC1	CLPC homologue 1
gma-u.5	100801296	chaperone protein ClpB3, chloroplastic
gma-u.5	100814891	chaperone protein ClpC, chloroplastic
gma-u.5	100804035	chaperone protein ClpC, chloroplastic
bra-r.6	103857258	chaperone protein ClpC1, chloroplastic
bra-r.6	103874893	chaperone protein ClpC2, chloroplastic
bra-r.6	103857205	chaperone protein ClpD, chloroplastic
vvi-u.5	100252611	chaperone protein ClpB3, chloroplastic
vvi-u.5	100250896	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic
vvi-u.5	100247399	chaperone protein ClpB4, mitochondrial
ppo-u.5	7484562	chaperone protein ClpB3, chloroplastic
ppo-u.5	7484908	chaperone protein ClpD, chloroplastic
ppo-u.5	7456671	chaperone protein ClpD, chloroplastic
mtr-u.5	25493878	chaperone protein ClpB1
mtr-u.5	25491143	chaperone protein ClpC, chloroplastic
mtr-u.5	25489942	chaperone protein ClpC, chloroplastic
ghi-r.1	107949637	chaperone protein ClpC1, chloroplastic
ghi-r.1	107944389	chaperone protein ClpC1, chloroplastic
ghi-r.1	107941442	chaperone protein ClpB1
bna-r.1	106368216	chaperone protein ClpB3, chloroplastic
bna-r.1	106372155	chaperone protein ClpB3, chloroplastic-like
bna-r.1	106354381	chaperone protein ClpB1
cit-r.1	102616406	chaperone protein ClpB3, chloroplastic
cit-r.1	102614277	chaperone protein ClpD, chloroplastic
osa-u.5	4335702	chaperone protein ClpC1, chloroplastic-like
osa-u.5	4328515	chaperone protein ClpB3, mitochondrial-like
osa-u.5	4329520	chaperone protein ClpD1, chloroplastic-like
zma-u.5	100193235	uncharacterized LOC100193235
zma-u.5	100217072	Chaperone protein ClpB4 mitochondrial
zma-u.5	100383416	uncharacterized LOC100383416
tae-r.2	123095866	chaperone protein ClpB1
tae-r.2	123070625	chaperone protein ClpB1
tae-r.2	123093995	chaperone protein ClpB2, chloroplastic
hvu-r.1	123400081	chaperone protein ClpD1, chloroplastic-like
hvu-r.1	123398804	chaperone protein ClpC2, chloroplastic
sbi-r.1	8079407	chaperone protein ClpB3, mitochondrial
sbi-r.1	8072070	chaperone protein ClpD2, chloroplastic
sbi-r.1	8072025	chaperone protein ClpC1, chloroplastic
bdi-r.1	100825913	chaperone protein ClpB1
bdi-r.1	100833912	chaperone protein ClpC1, chloroplastic
bdi-r.1	100840449	chaperone protein ClpD1, chloroplastic
cre-r.1	CHLRE_02g090850v5	uncharacterized protein
cre-r.1	CHLRE_11g467575v5	uncharacterized protein
cre-r.1	CHLRE_11g467644v5	uncharacterized protein

Top 50 coexpressed genes to 101248395 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101248395 (sly-u.5 coexpression data)

CoexMap"101248395"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0042026 [list] [network] protein refolding	(23 genes)	IEA
GO:0034605 [list] [network] cellular response to heat	(31 genes)	IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(5127 genes)

IEA

GO MF

GO:0016887 [list] [network] ATP hydrolysis activity	(408 genes)	IEA
GO:0005524 [list] [network] ATP binding	(1916 genes)	IEA

Protein

XP_010321892.1 [sequence] [blastp]
XP_010321893.1 [sequence] [blastp]
XP_010321894.1 [sequence] [blastp]
XP_069155149.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, chlo 4	(predict for XP_010321892.1)
mito 6, chlo 4	(predict for XP_010321893.1)
mito 6, chlo 4	(predict for XP_010321894.1)
mito 6, chlo 4	(predict for XP_069155149.1)

Subcellular
localization
TargetP

mito 7, chlo 5	(predict for XP_010321892.1)
mito 7, chlo 5	(predict for XP_010321893.1)
mito 7, chlo 5	(predict for XP_010321894.1)
mito 7, chlo 5	(predict for XP_069155149.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101248395	sly-r.6 for 101248395	sly-u.5 for 101248184	sly-u.5 for CD4B	sly-u.5 for 101254583	sot-r.1 for 102584342	sot-r.1 for 102583354	sot-r.1 for 102577597	nta-r.1 for 107771216	nta-r.1 for 107804165	nta-r.1 for 107817067	ath-u.5 for HSP101	ath-u.5 for ERD1	ath-u.5 for CLPC1	gma-u.5 for 100801296	gma-u.5 for 100814891	gma-u.5 for 100804035	bra-r.6 for 103857258	bra-r.6 for 103874893	bra-r.6 for 103857205	vvi-u.5 for 100252611	vvi-u.5 for 100250896	vvi-u.5 for 100247399	ppo-u.5 for 7484562	ppo-u.5 for 7484908	ppo-u.5 for 7456671	mtr-u.5 for 25493878	mtr-u.5 for 25491143	mtr-u.5 for 25489942	ghi-r.1 for 107949637	ghi-r.1 for 107944389	ghi-r.1 for 107941442	bna-r.1 for 106368216	bna-r.1 for 106372155	bna-r.1 for 106354381	cit-r.1 for 102616406	cit-r.1 for 102614277	osa-u.5 for 4335702	osa-u.5 for 4328515	osa-u.5 for 4329520	zma-u.5 for 100193235	zma-u.5 for 100217072	zma-u.5 for 100383416	tae-r.2 for 123095866	tae-r.2 for 123070625	tae-r.2 for 123093995	hvu-r.1 for 123400081	hvu-r.1 for 123398804	sbi-r.1 for 8079407	sbi-r.1 for 8072070	sbi-r.1 for 8072025	bdi-r.1 for 100825913	bdi-r.1 for 100833912	bdi-r.1 for 100840449	cre-r.1 for CHLRE_02g090850v5	cre-r.1 for CHLRE_11g467575v5	cre-r.1 for CHLRE_11g467644v5

Ortholog

Ortholog ID: 158

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CD4A

ERD1

CLPC1

CLPB4

HSP101

Function^*

chaperone protein ClpB4, mitochondrial

ATP-dependent protease CD4A

heat shock protein

ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic-like

ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic

chaperone protein ClpB3, chloroplastic

ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like

chaperone protein ClpB1

ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like

Clp ATPase

CLPC homologue 1

casein lytic proteinase B4

chaperone protein ClpB3, chloroplastic

chaperone protein ClpD, chloroplastic

chaperone protein ClpB3, chloroplastic

chaperone protein ClpC2, chloroplastic

chaperone protein ClpD, chloroplastic

chaperone protein ClpB3, chloroplastic

ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic

chaperone protein ClpB4, mitochondrial

heat shock protein 101

chaperone protein ClpC, chloroplastic

chaperone protein ClpB1

chaperone protein ClpC, chloroplastic

chaperone protein ClpD, chloroplastic

chaperone protein ClpB3, chloroplastic

chaperone protein ClpB1

chaperone protein ClpB3, chloroplastic

chaperone protein ClpD, chloroplastic

chaperone protein ClpB3, chloroplastic-like

chaperone protein ClpB4, mitochondrial-like

chaperone protein ClpB4, mitochondrial

chaperone protein ClpD, chloroplastic

chaperone protein ClpB4, mitochondrial

ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic

chaperone protein ClpB3, mitochondrial-like

chaperone protein ClpD1, chloroplastic-like

heat-shock protein 101

Chaperone protein ClpD chloroplastic

chaperone protein ClpB2, chloroplastic-like

chaperone protein ClpB3, mitochondrial

chaperone protein ClpD1, chloroplastic

chaperone protein ClpD2, chloroplastic

chaperone protein ClpC1, chloroplastic

chaperone protein ClpB3, mitochondrial

chaperone protein ClpD2, chloroplastic

chaperone protein ClpC1, chloroplastic

chaperone protein ClpD1, chloroplastic

chaperone protein ClpC2, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	4
sly03040	Spliceosome	2
sly04144	Endocytosis	2
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00561	Glycerolipid metabolism	2
sot00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	5
sot03040	Spliceosome	3
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	5
nta03040	Spliceosome	4
nta04144	Endocytosis	4
nta00053	Ascorbate and aldarate metabolism	2
nta00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00592	alpha-Linolenic acid metabolism	3
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00230	Purine metabolism	2
ath00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	4
ath04626	Plant-pathogen interaction	2
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	7
gma03040	Spliceosome	3
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00230	Purine metabolism	2
gma00600	Sphingolipid metabolism	2
gma00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	4
bra03250	Viral life cycle - HIV-1	2
bra03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	6
vvi03040	Spliceosome	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	11
vvi03040	Spliceosome	4
vvi04144	Endocytosis	4
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	10
ppo04626	Plant-pathogen interaction	2
ppo03040	Spliceosome	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00860	Porphyrin metabolism	2
mtr00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	12
ghi03040	Spliceosome	6
ghi04144	Endocytosis	6
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00730	Thiamine metabolism	2
ghi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	5
bna04626	Plant-pathogen interaction	5
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	8
cit04626	Plant-pathogen interaction	3
cit03040	Spliceosome	3
cit04144	Endocytosis	3
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00920	Sulfur metabolism	3
cit01320	Sulfur cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa03040	Spliceosome	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00860	Porphyrin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	12
zma03040	Spliceosome	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00061	Fatty acid biosynthesis	2
zma01212	Fatty acid metabolism	2
zma04075	Plant hormone signal transduction	2
zma04626	Plant-pathogen interaction	2
zma00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	4
zma03040	Spliceosome	2
zma04144	Endocytosis	2
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	4
hvu00260	Glycine, serine and threonine metabolism	3
hvu00630	Glyoxylate and dicarboxylate metabolism	3
hvu00710	Carbon fixation by Calvin cycle	2
hvu03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2
hvu03040	Spliceosome	2
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	5
sbi04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01230	Biosynthesis of amino acids	3
cre00970	Aminoacyl-tRNA biosynthesis	3
cre00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

101248395

101265014

778327

102584342

102583354

102592268

107804165

107763527

107798347

835180

835165

817052

100801296

100800786

100795662

103874893

103857205

103846412

100250896

100247399

100232966

7456642

18105736

18103824

25489942

11434548

11412992

107941442

107960369

107931444

106372155

106368579

106389772

102614277

102622978

102631183

4328515

4329520

541780

100383653

103636567

123136534

123104554

123426621

123426575

8079407

8072070

8072025

100840449

100825356

5724186

5718536

5716341

The preparation time of this page was 0.2 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	3	3	3	3	3	3	3	3	2	3	3	3	2	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101248395 (sly-u.5 coexpression data)

Top 50 enrichment test to 101248395 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**