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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101248632   polyadenylate-binding protein 7-like 
 sly-r.6   101248632   polyadenylate-binding protein 7-like 
 sly-u.5   101266448   polyadenylate-binding protein 7 
 ath-u.5   PAB7   poly(A) binding protein 7 
 gma-u.5   100807057   polyadenylate-binding protein 7 
 gma-u.5   100804671   polyadenylate-binding protein 7 
 gma-u.5   100798828   polyadenylate-binding protein 7 
 vvi-u.5   100267544   polyadenylate-binding protein 7 
 zma-u.5   103639307   polyadenylate-binding protein 7 

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Top 50 coexpressed genes to 101248632 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101248632 (sly-u.5 coexpression data)

CoexMap"101248632"


slyLOC101248632 | Entrez gene ID : 101248632      
Species sly ath gma vvi zma ppo cre mtr ghi cit hvu bdi sot bra sbi osa tae nta bna
Paralog 3 1 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03015 [list] [network] mRNA surveillance pathway (129 genes)
sly03018 [list] [network] RNA degradation (116 genes)
GO BP
GO CC
GO:1990904 [list] [network] ribonucleoprotein complex  (566 genes)  IEA  
GO:0005829 [list] [network] cytosol  (916 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0008266 [list] [network] poly(U) RNA binding  (6 genes)  IEA  
GO:0008143 [list] [network] poly(A) binding  (12 genes)  IEA  
GO:0003730 [list] [network] mRNA 3'-UTR binding  (15 genes)  IEA  
Protein XP_004249577.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 3,  cyto 1,  chlo_mito 1  (predict for XP_004249577.1)
Subcellular
localization
TargetP
other 7  (predict for XP_004249577.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101248632

.
sly-r.6
for
101248632

.
sly-u.5
for
101266448

.
ath-u.5
for
PAB7

.
gma-u.5
for
100807057

.
gma-u.5
for
100804671

.
gma-u.5
for
100798828

.
vvi-u.5
for
100267544

.
zma-u.5
for
103639307

.


Ortholog ID: 7947
Species ath gma gma sly sly zma vvi ghi ghi
Symbol PAB7 LOC100779547 LOC100804671 LOC101266448 LOC101248632 LOC103639307 LOC100267544 LOC107901740 LOC107899510
Function* poly(A) binding protein 7 polyadenylate-binding protein 7 polyadenylate-binding protein 7 polyadenylate-binding protein 7 polyadenylate-binding protein 7-like polyadenylate-binding protein 7 polyadenylate-binding protein 7 polyadenylate-binding protein 7 polyadenylate-binding protein 7
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 3
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00740 Riboflavin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00010 Glycolysis / Gluconeogenesis 3
sly01200 Carbon metabolism 3
sly03018 RNA degradation 3
sly00020 Citrate cycle (TCA cycle) 2
sly00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00941 Flavonoid biosynthesis 3
vvi03018 RNA degradation 2
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi00565 Ether lipid metabolism 2
ghi04144 Endocytosis 2
ghi03015 mRNA surveillance pathway 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 4
ghi03015 mRNA surveillance pathway 2
ghi03018 RNA degradation 2
ghi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818238 100779547 100804671 101266448 101248632 103639307 100267544 107901740 107899510
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