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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101248748   DNA mismatch repair protein MSH3 
 sly-r.6   101248748   DNA mismatch repair protein MSH3 
 ath-u.5   MSH3   homolog of DNA mismatch repair protein MSH3 
 gma-u.5   100789883   DNA mismatch repair protein MSH3 
 vvi-u.5   100266933   DNA mismatch repair protein MSH3 
 vvi-u.5   104878427   DNA mismatch repair protein MSH3 
 vvi-u.5   104878373   DNA mismatch repair protein MSH3 
 ppo-u.5   7474039   DNA mismatch repair protein MSH3 
 mtr-u.5   25485081   DNA mismatch repair protein MSH3 
 osa-u.5   4337442   DNA mismatch repair protein MSH3 
 zma-u.5   103642206   mutS superfamily protein 

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Top 50 coexpressed genes to 101248748 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101248748 (sly-u.5 coexpression data)

CoexMap"101248748"


slyLOC101248748 | Entrez gene ID : 101248748      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 2 1 1 3 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03430 [list] [network] Mismatch repair (34 genes)
GO BP
GO:0006312 [list] [network] mitotic recombination  (8 genes)  IEA  
GO:0006298 [list] [network] mismatch repair  (16 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0030983 [list] [network] mismatched DNA binding  (14 genes)  IEA  
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (19 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein XP_010317598.1 [sequence] [blastp]
XP_019068350.1 [sequence] [blastp]
XP_069152328.1 [sequence] [blastp]
XP_069152329.1 [sequence] [blastp]
XP_069152330.1 [sequence] [blastp]
XP_069152331.1 [sequence] [blastp]
XP_069152332.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 3,  cysk_nucl 3  (predict for XP_010317598.1)
nucl 5,  chlo 3,  cysk_nucl 3  (predict for XP_019068350.1)
nucl 5,  chlo 3,  cysk_nucl 3  (predict for XP_069152328.1)
nucl 5,  chlo 3,  cysk_nucl 3  (predict for XP_069152329.1)
nucl 5,  chlo 3,  cysk_nucl 3  (predict for XP_069152330.1)
nucl 4,  chlo 3,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_069152331.1)
nucl 4,  chlo 3,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_069152332.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_010317598.1)
chlo 7  (predict for XP_019068350.1)
chlo 7  (predict for XP_069152328.1)
chlo 7  (predict for XP_069152329.1)
chlo 7  (predict for XP_069152330.1)
chlo 7  (predict for XP_069152331.1)
chlo 7  (predict for XP_069152332.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101248748

.
sly-r.6
for
101248748

.
ath-u.5
for
MSH3

.
gma-u.5
for
100789883

.
vvi-u.5
for
100266933

.
vvi-u.5
for
104878427

.
vvi-u.5
for
104878373

.
ppo-u.5
for
7474039

.
mtr-u.5
for
25485081

.
osa-u.5
for
4337442

.
zma-u.5
for
103642206

.


Ortholog ID: 9045
Species ath gma sly osa zma bra vvi vvi ppo mtr tae hvu ghi ghi bna cre sbi sot cit bdi nta nta
Symbol MSH3 LOC100789883 LOC101248748 LOC4337442 LOC103642206 LOC103861568 LOC104878373 LOC104878427 LOC7474039 LOC25485081 LOC542976 LOC123427130 LOC107947306 LOC107936854 LOC106407650 CHLRE_09g397845v5 LOC8085890 LOC102598298 LOC102630910 LOC100824247 LOC107801185 LOC107762128
Function* homolog of DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 mutS superfamily protein DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 uncharacterized protein DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3 DNA mismatch repair protein MSH3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
ath03430 Mismatch repair 4
ath03460 Fanconi anemia pathway 3
ath03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 3
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03430 Mismatch repair 2
bra03460 Fanconi anemia pathway 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
mtr03020 RNA polymerase 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03430 Mismatch repair 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03430 Mismatch repair 5
bna03460 Fanconi anemia pathway 4
bna00270 Cysteine and methionine metabolism 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03460 Fanconi anemia pathway 2
sot03030 DNA replication 2
sot03410 Base excision repair 2
sot03420 Nucleotide excision repair 2
sot03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 4
nta03460 Fanconi anemia pathway 2
nta03420 Nucleotide excision repair 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03460 Fanconi anemia pathway 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828659 100789883 101248748 4337442 103642206 103861568 104878373 104878427 7474039 25485081 542976 123427130 107947306 107936854 106407650 5720367 8085890 102598298 102630910 100824247 107801185 107762128
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