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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101250003   topless-related protein 4 
 sly-r.6   101250003   topless-related protein 4 
 sly-u.5   101262960   topless-related protein 3 
 sly-u.5   101244499   topless-related protein 4-like 
 sly-u.5   101248801   topless-related protein 1-like 
 sot-r.1   102596956   topless-related protein 1-like 
 sot-r.1   102596120   topless-related protein 1-like 
 sot-r.1   102581018   protein TOPLESS-like 
 nta-r.1   107813542   topless-related protein 3 
 nta-r.1   107832581   topless-related protein 3-like 
 nta-r.1   107760294   topless-related protein 1 
 ath-u.5   WSIP2   WUS-interacting protein 2 
 ath-u.5   TPR2   TOPLESS-related 2 
 ath-u.5   TPR3   TOPLESS-related 3 
 gma-u.5   100793517   topless-related protein 3 
 gma-u.5   100808421   topless-related protein 3 
 gma-u.5   100805156   topless-related protein 4 
 bra-r.6   103854682   topless-related protein 3 
 bra-r.6   103859646   topless-related protein 4 
 vvi-u.5   100248092   protein TOPLESS 
 vvi-u.5   100262752   topless-related protein 1 
 vvi-u.5   100261303   topless-related protein 3 
 ppo-u.5   7481713   topless-related protein 3 
 ppo-u.5   7489125   topless-related protein 1 
 ppo-u.5   7459881   topless-related protein 4 
 mtr-u.5   11405937   topless-related protein 3 
 mtr-u.5   11418697   topless-related protein 1 
 ghi-r.1   107906445   protein TOPLESS 
 ghi-r.1   107901318   topless-related protein 4 
 ghi-r.1   107899070   topless-related protein 3 
 bna-r.1   106439427   topless-related protein 4 
 bna-r.1   106349692   topless-related protein 4-like 
 bna-r.1   106415399   protein TOPLESS 
 cit-r.1   102607647   topless-related protein 4-like 
 cit-r.1   102608406   topless-related protein 3 
 cit-r.1   102612385   topless-related protein 1-like 
 osa-u.5   4344728   protein TOPLESS-RELATED PROTEIN 2-like 
 osa-u.5   TPR3   protein TPR3-like 
 osa-u.5   4327709   protein TPR1-like 
 zma-u.5   100276114   topless-related2 
 zma-u.5   103649954   protein TPR1 
 tae-r.2   123157229   protein TOPLESS-RELATED PROTEIN 2 
 hvu-r.1   123449126   protein TPR3 
 hvu-r.1   123443393   protein TPR1 
 hvu-r.1   123410003   protein TOPLESS-RELATED PROTEIN 2 
 sbi-r.1   110433802   protein TPR1 
 sbi-r.1   8080859   protein TPR2 
 sbi-r.1   8054324   protein TPR3 
 bdi-r.1   100834097   protein TPR1 
 bdi-r.1   100832352   protein TPR2 
 bdi-r.1   100832687   protein TPR3 

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Top 50 coexpressed genes to 101250003 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101250003 (sly-u.5 coexpression data)

CoexMap"101250003"


slyLOC101250003 | Entrez gene ID : 101250003      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 5 3 3 3 3 2 3 3 2 3 3 3 3 2 1 3 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1608 genes)  IEA  
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004235952.1 [sequence] [blastp]
XP_010318757.1 [sequence] [blastp]
XP_010318758.1 [sequence] [blastp]
XP_069151707.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 4,  cyto 1  (predict for XP_004235952.1)
chlo 5,  nucl 4,  cyto 1  (predict for XP_010318757.1)
chlo 6,  nucl 3,  chlo_mito 3  (predict for XP_010318758.1)
chlo 6,  nucl 3,  chlo_mito 3  (predict for XP_069151707.1)
Subcellular
localization
TargetP
other 5,  scret 4  (predict for XP_004235952.1)
other 5,  scret 4  (predict for XP_010318757.1)
other 5,  scret 4  (predict for XP_010318758.1)
other 5,  scret 4  (predict for XP_069151707.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101250003
sly-r.6
for
101250003
sly-u.5
for
101262960
sly-u.5
for
101244499
sly-u.5
for
101248801
sot-r.1
for
102596956
sot-r.1
for
102596120
sot-r.1
for
102581018
nta-r.1
for
107813542
nta-r.1
for
107832581
nta-r.1
for
107760294
ath-u.5
for
WSIP2
ath-u.5
for
TPR2
ath-u.5
for
TPR3
gma-u.5
for
100793517
gma-u.5
for
100808421
gma-u.5
for
100805156
bra-r.6
for
103854682
bra-r.6
for
103859646
vvi-u.5
for
100248092
vvi-u.5
for
100262752
vvi-u.5
for
100261303
ppo-u.5
for
7481713
ppo-u.5
for
7489125
ppo-u.5
for
7459881
mtr-u.5
for
11405937
mtr-u.5
for
11418697
ghi-r.1
for
107906445
ghi-r.1
for
107901318
ghi-r.1
for
107899070
bna-r.1
for
106439427
bna-r.1
for
106349692
bna-r.1
for
106415399
cit-r.1
for
102607647
cit-r.1
for
102608406
cit-r.1
for
102612385
osa-u.5
for
4344728
osa-u.5
for
TPR3
osa-u.5
for
4327709
zma-u.5
for
100276114
zma-u.5
for
103649954
tae-r.2
for
123157229
hvu-r.1
for
123449126
hvu-r.1
for
123443393
hvu-r.1
for
123410003
sbi-r.1
for
110433802
sbi-r.1
for
8080859
sbi-r.1
for
8054324
bdi-r.1
for
100834097
bdi-r.1
for
100832352
bdi-r.1
for
100832687


Ortholog ID: 377
Species sly sly sly sot sot sot nta nta nta ath ath ath gma gma gma bra bra bra vvi vvi vvi ppo ppo ppo mtr mtr ghi ghi ghi bna bna bna cit cit cit osa osa osa zma zma zma tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi
Symbol LOC101262960 LOC101244499 LOC101248801 LOC102596120 LOC102581018 LOC107058255 LOC107832581 LOC107776850 LOC107818525 WSIP2 TPL TPR1 LOC100800771 LOC100798219 LOC100790282 LOC103854682 LOC103869731 LOC103842887 LOC100248092 LOC100247343 LOC100244059 LOC7459881 LOC18096682 LOC18094856 LOC11418697 LOC11420997 LOC107957517 LOC121204747 LOC121229336 LOC106439427 LOC106349833 LOC106406158 LOC102607647 LOC102608406 LOC102624824 LOC4344728 TPR3 LOC4327709 LOC100193888 LOC103634695 LOC100381576 LOC123085314 LOC123159638 LOC123449126 LOC123443393 LOC123410003 LOC110433802 LOC8080859 LOC8054324 LOC100834097 LOC100832352 LOC100832687
Function* topless-related protein 3 topless-related protein 4-like topless-related protein 1-like topless-related protein 1-like protein TOPLESS-like topless-related protein 1-like topless-related protein 3-like topless-related protein 3 topless-related protein 1 WUS-interacting protein 2 Transducin family protein / WD-40 repeat family protein TOPLESS-related 1 topless-related protein 3 topless-related protein 1 topless-related protein 1 topless-related protein 3 topless-related protein 2 protein TOPLESS protein TOPLESS topless-related protein 4 topless-related protein 4 topless-related protein 4 topless-related protein 1 protein TOPLESS topless-related protein 1 topless-related protein 1 topless-related protein 1 protein TOPLESS-RELATED PROTEIN 2 protein TOPLESS topless-related protein 4 protein TOPLESS topless-related protein 4-like topless-related protein 4-like topless-related protein 3 topless-related protein 2 protein TOPLESS-RELATED PROTEIN 2-like protein TPR3-like protein TPR1-like uncharacterized LOC100193888 protein TPR1 uncharacterized LOC100381576 protein TPR3 protein TPR1 protein TPR3 protein TPR1 protein TOPLESS-RELATED PROTEIN 2 protein TPR1 protein TPR2 protein TPR3 protein TPR1 protein TPR2 protein TPR3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00511 Other glycan degradation 2
nta00513 Various types of N-glycan biosynthesis 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta00531 Glycosaminoglycan degradation 2
nta00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 4
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
gma00260 Glycine, serine and threonine metabolism 2
gma00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 5
ppo04144 Endocytosis 3
ppo04142 Lysosome 2
ppo05100 Bacterial invasion of epithelial cells 2
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
ghi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03082 ATP-dependent chromatin remodeling 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
ghi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
zma03250 Viral life cycle - HIV-1 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04146 Peroxisome 2
hvu03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00650 Butanoate metabolism 2
sbi00561 Glycerolipid metabolism 2
sbi01200 Carbon metabolism 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi04136 Autophagy - other 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 5
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 3
bdi04142 Lysosome 2
bdi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
bdi03050 Proteasome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101262960 101244499 101248801 102596120 102581018 107058255 107832581 107776850 107818525 820831 838144 844388 100800771 100798219 100790282 103854682 103869731 103842887 100248092 100247343 100244059 7459881 18096682 18094856 11418697 11420997 107957517 121204747 121229336 106439427 106349833 106406158 102607647 102608406 102624824 4344728 4332285 4327709 100193888 103634695 100381576 123085314 123159638 123449126 123443393 123410003 110433802 8080859 8054324 100834097 100832352 100832687
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