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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101250035   poly(A)-specific ribonuclease PARN 
 sly-r.6   101250035   poly(A)-specific ribonuclease PARN 
 ath-u.5   AHG2   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 gma-u.5   100808217   poly(A)-specific ribonuclease PARN 
 gma-u.5   100784997   poly(A)-specific ribonuclease PARN 
 vvi-u.5   100258377   poly(A)-specific ribonuclease PARN 
 ppo-u.5   7487549   poly(A)-specific ribonuclease PARN 
 ppo-u.5   7497342   poly(A)-specific ribonuclease PARN-like 
 mtr-u.5   25490728   poly(A)-specific ribonuclease PARN 
 osa-u.5   9268289   poly(A)-specific ribonuclease PARN 
 zma-u.5   100383372   Poly(A)-specific ribonuclease PARN 

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Top 50 coexpressed genes to 101250035 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101250035 (sly-u.5 coexpression data)

CoexMap"101250035"


slyLOC101250035 | Entrez gene ID : 101250035      
Species sly ath gma vvi ppo mtr osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 2 1 2 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03018 [list] [network] RNA degradation (116 genes)
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (30 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
Protein XP_004244040.1 [sequence] [blastp]
XP_019070513.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo_mito 4,  cyto_mito 2,  chlo 2,  nucl 2  (predict for XP_004244040.1)
nucl 6,  cyto 4  (predict for XP_019070513.1)
Subcellular
localization
TargetP
mito 8,  chlo 4  (predict for XP_004244040.1)
other 8  (predict for XP_019070513.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101250035

.
sly-r.6
for
101250035

.
ath-u.5
for
AHG2

.
gma-u.5
for
100808217

.
gma-u.5
for
100784997

.
vvi-u.5
for
100258377

.
ppo-u.5
for
7487549

.
ppo-u.5
for
7497342

.
mtr-u.5
for
25490728

.
osa-u.5
for
9268289

.
zma-u.5
for
100383372

.


Ortholog ID: 8745
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre cre sbi sot sot cit bdi nta nta
Symbol AHG2 LOC100808217 LOC100784997 LOC101250035 LOC9268289 LOC100383372 LOC103871015 LOC100258377 LOC7487549 LOC7497342 LOC25490728 LOC123053584 LOC123045712 LOC123426963 LOC107952988 LOC107922431 LOC106415384 LOC125610054 CHLRE_02g095071v5 CHLRE_02g090276v5 LOC8073560 LOC107060326 LOC102581626 LOC102630341 LOC100828356 LOC107804188 LOC107767706
Function* Polynucleotidyl transferase, ribonuclease H-like superfamily protein poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN Poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN-like uncharacterized protein uncharacterized protein poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 12
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 7
ghi03015 mRNA surveillance pathway 7
ghi03040 Spliceosome 7
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03040 Spliceosome 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03060 Protein export 2
bna03020 RNA polymerase 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03020 RNA polymerase 3
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
nta03040 Spliceosome 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842037 100808217 100784997 101250035 9268289 100383372 103871015 100258377 7487549 7497342 25490728 123053584 123045712 123426963 107952988 107922431 106415384 125610054 66052361 5727468 8073560 107060326 102581626 102630341 100828356 107804188 107767706
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