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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   104882319   replication factor C subunit 3 
 ppo-u.5   7491863   replication factor C subunit 3 
 mtr-u.5   11429308   uncharacterized LOC11429308 
 osa-u.5   4349480   replication factor C subunit 3 
 zma-u.5   103637697   replication factor C subunit 5 
 tae-r.2   123181460   replication factor C subunit 5 
 tae-r.2   123125816   replication factor C subunit 5 
 hvu-r.1   123436119   replication factor C subunit 5-like 
 bdi-r.1   100835863   replication factor C subunit 3 

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Top 50 coexpressed genes to 104882319 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 104882319 (vvi-u.5 coexpression data)

CoexMap"101250629"


slyLOC101250629 | Entrez gene ID : 101250629    
Species vvi ppo mtr osa zma tae hvu bdi sot sly nta bna ath cre sbi gma bra ghi cit
Paralog 1 1 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03030 [list] [network] DNA replication (43 genes)
sly03410 [list] [network] Base excision repair (52 genes)
sly03420 [list] [network] Nucleotide excision repair (70 genes)
sly03430 [list] [network] Mismatch repair (34 genes)
GO BP
GO:0006261 [list] [network] DNA-templated DNA replication  (72 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (281 genes)  IEA  
GO CC
GO:0005663 [list] [network] DNA replication factor C complex  (11 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0003689 [list] [network] DNA clamp loader activity  (13 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1883 genes)  IEA  
Protein XP_010323551.4 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 4,  cyto_nucl 3,  mito 1,  golg_plas 1  (predict for XP_010323551.4)
Subcellular
localization
TargetP
chlo 4  (predict for XP_010323551.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
104882319
ppo-u.5
for
7491863
mtr-u.5
for
11429308
osa-u.5
for
4349480
zma-u.5
for
103637697
tae-r.2
for
123181460
tae-r.2
for
123125816
hvu-r.1
for
123436119
bdi-r.1
for
100835863


Ortholog ID: 11180
Species vvi ppo mtr osa zma tae hvu bdi
Symbol LOC104882319 LOC7491863 LOC11429308 LOC4349480 LOC103637697 LOC123125816 LOC123436119 LOC100835863
Function* replication factor C subunit 3 replication factor C subunit 3 uncharacterized LOC11429308 replication factor C subunit 3 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 5-like replication factor C subunit 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03020 RNA polymerase 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 4
osa00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00564 Glycerophospholipid metabolism 2
zma00562 Inositol phosphate metabolism 2
zma00561 Glycerolipid metabolism 2
zma00740 Riboflavin metabolism 2
zma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 4
tae02010 ABC transporters 3
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 104882319 7491863 11429308 4349480 103637697 123125816 123436119 100835863
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