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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101251229   alanine--tRNA ligase, chloroplastic/mitochondrial 
 sly-r.6   101251229   alanine--tRNA ligase, chloroplastic/mitochondrial 
 ath-u.5   EMB1030   Alanyl-tRNA synthetase, class IIc 
 gma-u.5   100817906   alanine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.5   100788288   alanine--tRNA ligase, chloroplastic/mitochondrial 
 vvi-u.5   100255425   alanine--tRNA ligase, chloroplastic/mitochondrial 
 ppo-u.5   7472090   alanine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   11419289   alanine--tRNA ligase, chloroplastic/mitochondrial 
 osa-u.5   9266147   alanine--tRNA ligase, chloroplastic/mitochondrial-like 
 zma-u.5   100275233   uncharacterized LOC100275233 

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Top 50 coexpressed genes to 101251229 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101251229 (sly-u.5 coexpression data)

CoexMap"101251229"


slyLOC101251229 | Entrez gene ID : 101251229      
Species sly ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 2 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00970 [list] [network] Aminoacyl-tRNA biosynthesis (114 genes)
GO BP
GO:0006419 [list] [network] alanyl-tRNA aminoacylation  (2 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (632 genes)  IEA  
GO:0005829 [list] [network] cytosol  (916 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0004813 [list] [network] alanine-tRNA ligase activity  (2 genes)  IEA  
GO:0002161 [list] [network] aminoacyl-tRNA deacylase activity  (14 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4457 genes)  IEA  
Protein XP_004231078.1 [sequence] [blastp]
XP_010315406.1 [sequence] [blastp]
XP_010315407.1 [sequence] [blastp]
XP_010315409.1 [sequence] [blastp]
XP_025884677.1 [sequence] [blastp]
XP_025884678.1 [sequence] [blastp]
XP_069149106.1 [sequence] [blastp]
XP_069149107.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 3  (predict for XP_004231078.1)
chlo 7,  chlo_mito 5,  mito 2  (predict for XP_010315406.1)
cyto 9,  chlo 1,  extr 1  (predict for XP_010315407.1)
cyto 5,  nucl 2,  chlo 1,  cysk_nucl 1  (predict for XP_010315409.1)
cyto 8,  chlo 2  (predict for XP_025884677.1)
mito 4,  chlo 3,  cyto 3  (predict for XP_025884678.1)
cyto 9,  chlo 1,  extr 1  (predict for XP_069149106.1)
cyto 9,  chlo 1,  extr 1  (predict for XP_069149107.1)
Subcellular
localization
TargetP
other 5,  chlo 4  (predict for XP_004231078.1)
chlo 4,  other 4  (predict for XP_010315406.1)
other 6  (predict for XP_010315407.1)
other 8,  mito 4  (predict for XP_010315409.1)
other 2  (predict for XP_025884677.1)
mito 5  (predict for XP_025884678.1)
other 6  (predict for XP_069149106.1)
other 6  (predict for XP_069149107.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101251229
sly-r.6
for
101251229
ath-u.5
for
EMB1030
gma-u.5
for
100817906
gma-u.5
for
100788288
vvi-u.5
for
100255425
ppo-u.5
for
7472090
mtr-u.5
for
11419289
osa-u.5
for
9266147
zma-u.5
for
100275233


Ortholog ID: 9685
Species sly sot nta nta ath gma gma bra vvi ppo mtr ghi ghi bna bna cit osa zma tae tae hvu sbi bdi cre
Symbol LOC101251229 LOC102579285 LOC107801659 LOC107766724 EMB1030 LOC100788288 LOC100817906 LOC103851463 LOC100255425 LOC7472090 LOC11419289 LOC107908626 LOC107927981 LOC106410267 LOC106384569 LOC102609229 LOC9266147 LOC100275233 LOC123149336 LOC123163220 LOC123412761 LOC8065711 LOC100822003 CHLRE_08g368900v5
Function* alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial Alanyl-tRNA synthetase, class IIc alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial-like uncharacterized LOC100275233 alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial alanine--tRNA ligase, chloroplastic/mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 4
sly03060 Protein export 2
sly00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00380 Tryptophan metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma01200 Carbon metabolism 2
gma04016 MAPK signaling pathway - plant 2
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00020 Citrate cycle (TCA cycle) 2
gma00270 Cysteine and methionine metabolism 2
gma00566 Sulfoquinovose metabolism 2
gma00620 Pyruvate metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 6
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00010 Glycolysis / Gluconeogenesis 3
bra00710 Carbon fixation by Calvin cycle 3
bra01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 7
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 5
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 3
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 7
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101251229 102579285 107801659 107766724 832343 100788288 100817906 103851463 100255425 7472090 11419289 107908626 107927981 106410267 106384569 102609229 9266147 100275233 123149336 123163220 123412761 8065711 100822003 5721714
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