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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101251978   ATP-dependent DNA helicase homolog RECG, chloroplastic 
 sly-r.6   101251978   ATP-dependent DNA helicase homolog RECG, chloroplastic 
 ath-u.5   AT2G01440   DEAD/DEAH box RNA helicase family protein 
 gma-u.5   100806552   ATP-dependent DNA helicase homolog RECG, chloroplastic 
 vvi-u.5   100252614   ATP-dependent DNA helicase homolog RECG, chloroplastic 
 ppo-u.5   7475530   ATP-dependent DNA helicase homolog RECG, chloroplastic 
 mtr-u.5   25489600   ATP-dependent DNA helicase homolog RECG, chloroplastic 
 mtr-u.5   11422507   ATP-dependent DNA helicase homolog RECG, chloroplastic 
 osa-u.5   4330491   ATP-dependent DNA helicase homolog RECG, chloroplastic 
 zma-u.5   103627634   ATP-dependent DNA helicase homolog RECG chloroplastic 

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Top 50 coexpressed genes to 101251978 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101251978 (sly-u.5 coexpression data)

CoexMap"101251978"


slyLOC101251978 | Entrez gene ID : 101251978    
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03440 [list] [network] Homologous recombination (60 genes)
GO BP
GO:0006310 [list] [network] DNA recombination  (116 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (281 genes)  IEA  
GO CC
GO MF
GO:0003678 [list] [network] DNA helicase activity  (57 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4457 genes)  IEA  
Protein XP_004238835.1 [sequence] [blastp]
XP_019069604.1 [sequence] [blastp]
XP_025886819.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  plas 3,  nucl 2,  cyto 1,  cysk 1  (predict for XP_004238835.1)
nucl 4,  cyto 1,  plas 1,  vacu 1,  golg 1,  golg_plas 1,  cyto_plas 1  (predict for XP_019069604.1)
nucl 3,  cyto 2,  nucl_plas 2,  plas 1,  E.R. 1,  cysk_nucl 1,  E.R._plas 1  (predict for XP_025886819.1)
Subcellular
localization
TargetP
mito 3,  chlo 3  (predict for XP_004238835.1)
other 9  (predict for XP_019069604.1)
other 7,  scret 3  (predict for XP_025886819.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101251978

.
sly-r.6
for
101251978

.
ath-u.5
for
AT2G01440

.
gma-u.5
for
100806552

.
vvi-u.5
for
100252614

.
ppo-u.5
for
7475530

.
mtr-u.5
for
25489600

.
mtr-u.5
for
11422507

.
osa-u.5
for
4330491

.
zma-u.5
for
103627634

.


Ortholog ID: 10641
Species ath gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta
Symbol AT2G01440 LOC100806552 LOC101251978 LOC4330491 LOC103627634 LOC103827589 LOC100252614 LOC7475530 LOC11422507 LOC25489600 LOC123145259 LOC123128158 LOC123406336 LOC107931919 LOC107909918 LOC106406031 LOC125590716 CHLRE_01g021850v5 LOC8073842 LOC102583700 LOC102606824 LOC100841141 LOC107829301
Function* DEAD/DEAH box RNA helicase family protein ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic-like uncharacterized protein ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase RecG ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG, chloroplastic ATP-dependent DNA helicase homolog RECG1, chloroplastic/mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03082 ATP-dependent chromatin remodeling 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03082 ATP-dependent chromatin remodeling 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03040 Spliceosome 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 5
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814672 100806552 101251978 4330491 103627634 103827589 100252614 7475530 11422507 25489600 123145259 123128158 123406336 107931919 107909918 106406031 125590716 66052026 8073842 102583700 102606824 100841141 107829301
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