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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101252681   growth-regulating factor 1-like 
 sly-r.6   101252681   growth-regulating factor 1-like 
 sly-u.5   101244049   growth-regulating factor 2-like 
 sot-r.1   102595967   growth-regulating factor 1-like 
 sot-r.1   102582107   growth-regulating factor 1-like 
 nta-r.1   107760271   growth-regulating factor 1-like 
 nta-r.1   107763641   growth-regulating factor 1-like 
 nta-r.1   107764760   growth-regulating factor 1 
 ath-u.5   GRF1   growth-regulating factor 1 
 ath-u.5   GRF2   growth-regulating factor 2 
 gma-u.5   GRF22   growth-regulating factor 
 gma-u.5   GRF18   growth-regulating factor 
 gma-u.5   GRF19   growth-regulating factor 
 bra-r.6   103858395   growth-regulating factor 1 
 bra-r.6   103862578   growth-regulating factor 2 
 bra-r.6   103858126   growth-regulating factor 2 
 vvi-u.5   100260890   growth-regulating factor 1 
 vvi-u.5   100853530   growth-regulating factor 1 
 ppo-u.5   7497735   growth-regulating factor 1 
 ppo-u.5   7464777   growth-regulating factor 1 
 ppo-u.5   7472639   growth-regulating factor 6-like 
 mtr-u.5   25482044   growth-regulating factor 1 
 ghi-r.1   107905212   growth-regulating factor 1 
 ghi-r.1   107905164   growth-regulating factor 1 
 ghi-r.1   107930622   growth-regulating factor 1 
 bna-r.1   125584397   growth-regulating factor 1-like 
 bna-r.1   106383561   growth-regulating factor 2-like 
 bna-r.1   106389497   growth-regulating factor 1 
 cit-r.1   102618741   growth-regulating factor 1 
 osa-u.5   9268363   growth-regulating factor 7-like 
 osa-u.5   4333990   growth-regulating factor 6-like 
 zma-u.5   100285734   uncharacterized LOC100285734 
 zma-u.5   100191470   uncharacterized LOC100191470 
 tae-r.2   123087001   growth-regulating factor 6 
 tae-r.2   123090965   growth-regulating factor 6 
 tae-r.2   123095990   growth-regulating factor 6 
 hvu-r.1   123447656   growth-regulating factor 6-like 
 sbi-r.1   8060535   growth-regulating factor 6 
 bdi-r.1   100833132   growth-regulating factor 6 

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Top 50 coexpressed genes to 101252681 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101252681 (sly-u.5 coexpression data)

CoexMap"101252681"


slyLOC101252681 | Entrez gene ID : 101252681      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 3 2 3 2 3 3 2 3 1 3 3 1 2 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (217 genes)  IEA  
GO:0032502 [list] [network] developmental process  (354 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1608 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein XP_004238069.1 [sequence] [blastp]
XP_025886627.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_004238069.1)
nucl 9  (predict for XP_025886627.1)
Subcellular
localization
TargetP
other 9  (predict for XP_004238069.1)
other 9  (predict for XP_025886627.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101252681
sly-r.6
for
101252681
sly-u.5
for
101244049
sot-r.1
for
102595967
sot-r.1
for
102582107
nta-r.1
for
107760271
nta-r.1
for
107763641
nta-r.1
for
107764760
ath-u.5
for
GRF1
ath-u.5
for
GRF2
gma-u.5
for
GRF22
gma-u.5
for
GRF18
gma-u.5
for
GRF19
bra-r.6
for
103858395
bra-r.6
for
103862578
bra-r.6
for
103858126
vvi-u.5
for
100260890
vvi-u.5
for
100853530
ppo-u.5
for
7497735
ppo-u.5
for
7464777
ppo-u.5
for
7472639
mtr-u.5
for
25482044
ghi-r.1
for
107905212
ghi-r.1
for
107905164
ghi-r.1
for
107930622
bna-r.1
for
125584397
bna-r.1
for
106383561
bna-r.1
for
106389497
cit-r.1
for
102618741
osa-u.5
for
9268363
osa-u.5
for
4333990
zma-u.5
for
100285734
zma-u.5
for
100191470
tae-r.2
for
123087001
tae-r.2
for
123090965
tae-r.2
for
123095990
hvu-r.1
for
123447656
sbi-r.1
for
8060535
bdi-r.1
for
100833132


Ortholog ID: 3199
Species sly sly sot sot nta nta nta ath ath gma gma gma bra bra bra vvi vvi ppo ppo ppo mtr ghi ghi ghi bna bna bna cit osa osa zma zma tae tae tae hvu sbi bdi
Symbol LOC101252681 LOC101244049 LOC102595967 LOC102582107 LOC107760271 LOC107764760 LOC107808379 GRF1 GRF2 GRF22 GRF18 GRF21 LOC103858395 LOC103862578 LOC103858126 LOC100260890 LOC100853530 LOC7497735 LOC7464777 LOC7497312 LOC25482044 LOC107938334 LOC107941922 LOC121202961 LOC125584397 LOC106407512 LOC106426792 LOC102618741 LOC9268363 LOC4333990 LOC100285734 LOC100191470 LOC123087001 LOC123090965 LOC123095990 LOC123447656 LOC8060535 LOC100833132
Function* growth-regulating factor 1-like growth-regulating factor 2-like growth-regulating factor 1-like growth-regulating factor 1-like growth-regulating factor 1-like growth-regulating factor 1 growth-regulating factor 1-like growth-regulating factor 1 growth-regulating factor 2 growth-regulating factor growth-regulating factor growth-regulating factor growth-regulating factor 1 growth-regulating factor 2 growth-regulating factor 2 growth-regulating factor 1 growth-regulating factor 1 growth-regulating factor 1 growth-regulating factor 1 growth-regulating factor 1 growth-regulating factor 1 growth-regulating factor 1 growth-regulating factor 1 growth-regulating factor 1 growth-regulating factor 1-like growth-regulating factor 2-like growth-regulating factor 2-like growth-regulating factor 1 growth-regulating factor 7-like growth-regulating factor 6-like uncharacterized LOC100285734 uncharacterized LOC100191470 growth-regulating factor 6 growth-regulating factor 6 growth-regulating factor 6 growth-regulating factor 6-like growth-regulating factor 6 growth-regulating factor 6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00360 Phenylalanine metabolism 2
vvi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101252681 101244049 102595967 102582107 107760271 107764760 107808379 816815 829930 100807080 100818860 100807610 103858395 103862578 103858126 100260890 100853530 7497735 7464777 7497312 25482044 107938334 107941922 121202961 125584397 106407512 106426792 102618741 9268363 4333990 100285734 100191470 123087001 123090965 123095990 123447656 8060535 100833132
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