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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101253003   protein THYLAKOID FORMATION1, chloroplastic 
 sly-r.6   101253003   protein THYLAKOID FORMATION1, chloroplastic 
 sly-m.5   101253003   protein THYLAKOID FORMATION1, chloroplastic 
 ath-u.5   PSB29   photosystem II reaction center PSB29 protein 
 gma-u.5   100796767   protein THYLAKOID FORMATION1, chloroplastic 
 gma-u.5   100792508   protein THYLAKOID FORMATION1, chloroplastic 
 gma-u.5   100779964   protein THYLAKOID FORMATION1, chloroplastic 
 vvi-u.5   100259646   protein THYLAKOID FORMATION1, chloroplastic 
 ppo-u.5   7494440   protein THYLAKOID FORMATION1, chloroplastic 
 ppo-u.5   7494227   protein THYLAKOID FORMATION1, chloroplastic 
 mtr-u.5   25487573   protein THYLAKOID FORMATION1, chloroplastic 
 mtr-u.5   25492064   protein THYLAKOID FORMATION1, chloroplastic 
 osa-u.5   4343584   protein THYLAKOID FORMATION1, chloroplastic-like 
 zma-u.5   100382672   Protein THYLAKOID FORMATION 1 chloroplastic 
 zma-u.5   100193314   chloroplast-localized Ptr ToxA-binding protein 1 

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Top 50 coexpressed genes to 101253003 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101253003 (sly-u.5 coexpression data)

CoexMap"101253003"


slyLOC101253003 | Entrez gene ID : 101253003    
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 1 3 1 2 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045038 [list] [network] protein import into chloroplast thylakoid membrane  (1 genes)  IEA  
GO:0045037 [list] [network] protein import into chloroplast stroma  (5 genes)  IEA  
GO:0010207 [list] [network] photosystem II assembly  (6 genes)  IEA  
GO:0010027 [list] [network] thylakoid membrane organization  (11 genes)  IEA  
GO:0015979 [list] [network] photosynthesis  (101 genes)  IEA  
GO CC
GO:0009534 [list] [network] chloroplast thylakoid  (145 genes)  IEA  
GO MF
Protein XP_004243305.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 2  (predict for XP_004243305.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_004243305.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101253003

.
sly-r.6
for
101253003

.
sly-m.5
for
101253003

.
ath-u.5
for
PSB29

.
gma-u.5
for
100796767

.
gma-u.5
for
100792508

.
gma-u.5
for
100779964

.
vvi-u.5
for
100259646

.
ppo-u.5
for
7494440

.
ppo-u.5
for
7494227

.
mtr-u.5
for
25487573

.
mtr-u.5
for
25492064

.
osa-u.5
for
4343584

.
zma-u.5
for
100382672

.
zma-u.5
for
100193314

.


Ortholog ID: 7510
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PSB29 LOC100814341 LOC100796767 LOC101253003 LOC4343584 LOC100193314 LOC100382672 LOC103842574 LOC100259646 LOC7494440 LOC7494227 LOC25492064 LOC25487573 LOC123188272 LOC543119 LOC123425712 LOC107898931 LOC107948994 LOC106368798 LOC106415074 CHLRE_13g562850v5 LOC8056327 THF1 LOC102609819 LOC100839581 LOC107808613 LOC107776485
Function* photosystem II reaction center PSB29 protein protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic-like chloroplast-localized Ptr ToxA-binding protein 1 Protein THYLAKOID FORMATION 1 chloroplastic protein THYLAKOID FORMATION 1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION 1, chloroplastic protein THYLAKOID FORMATION 1, chloroplastic uncharacterized protein protein THYLAKOID FORMATION1, chloroplastic light-regulated chloroplast-localized protein protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic protein THYLAKOID FORMATION1, chloroplastic-like protein THYLAKOID FORMATION1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 11
gma01200 Carbon metabolism 11
gma00010 Glycolysis / Gluconeogenesis 5
gma00030 Pentose phosphate pathway 5
gma00051 Fructose and mannose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 3
gma01200 Carbon metabolism 3
gma03010 Ribosome 2
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 5
zma01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 4
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 4
vvi00195 Photosynthesis 3
vvi00710 Carbon fixation by Calvin cycle 3
vvi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ppo00350 Tyrosine metabolism 2
ppo00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 6
ppo00710 Carbon fixation by Calvin cycle 3
ppo01200 Carbon metabolism 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 2
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00053 Ascorbate and aldarate metabolism 3
tae00480 Glutathione metabolism 3
tae03010 Ribosome 3
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00053 Ascorbate and aldarate metabolism 3
tae00480 Glutathione metabolism 3
tae00860 Porphyrin metabolism 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 4
ghi03010 Ribosome 3
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 6
sbi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot00710 Carbon fixation by Calvin cycle 3
sot01200 Carbon metabolism 3
sot01230 Biosynthesis of amino acids 3
sot00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 2
cit00350 Tyrosine metabolism 2
cit00010 Glycolysis / Gluconeogenesis 2
cit00071 Fatty acid degradation 2
cit00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00710 Carbon fixation by Calvin cycle 2
bdi01200 Carbon metabolism 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 11
nta00750 Vitamin B6 metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816623 100814341 100796767 101253003 4343584 100193314 100382672 103842574 100259646 7494440 7494227 25492064 25487573 123188272 543119 123425712 107898931 107948994 106368798 106415074 5718977 8056327 102577610 102609819 100839581 107808613 107776485
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